View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16515_low_79 (Length: 252)

Name: NF16515_low_79
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16515_low_79
NF16515_low_79
[»] chr3 (22 HSPs)
chr3 (15-232)||(5298828-5299045)
chr3 (16-232)||(5250266-5250482)
chr3 (15-232)||(5268153-5268370)
chr3 (22-164)||(8589894-8590036)
chr3 (22-183)||(4388659-4388826)
chr3 (29-164)||(6736155-6736290)
chr3 (29-164)||(6947434-6947569)
chr3 (22-164)||(6448504-6448646)
chr3 (71-208)||(5280802-5280939)
chr3 (42-174)||(8568690-8568822)
chr3 (29-164)||(6554167-6554302)
chr3 (29-164)||(6479711-6479846)
chr3 (32-159)||(8454824-8454951)
chr3 (32-226)||(8471664-8471858)
chr3 (74-226)||(6591105-6591257)
chr3 (92-163)||(6519954-6520025)
chr3 (83-173)||(6721852-6721942)
chr3 (32-226)||(6838633-6838827)
chr3 (112-226)||(6882632-6882746)
chr3 (92-226)||(6265819-6265953)
chr3 (122-166)||(6142474-6142518)
chr3 (126-226)||(6900216-6900316)
[»] scaffold0425 (1 HSPs)
scaffold0425 (29-164)||(7206-7341)
[»] chr7 (1 HSPs)
chr7 (40-153)||(6573038-6573151)


Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 15 - 232
Target Start/End: Complemental strand, 5299045 - 5298828
Alignment:
Q  15 agcagagactaacaggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatgg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5299045 agcagagactaacaggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatgg 5298946  T
Q  115 atctaccggaagtaagattattgtgacaacacgtgacaaggaggtagcatcagtcatgaagtccaccaaacttcttcatttgaagcaattggagaagagt 214  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  5298945 atctaccggaagtaagattattgtgaccacacgtgacaaggaggtagcatcagttatgaagtccaccaaacttcttcatttgaagcaattgaagaagagt 5298846  T
Q  215 gaatgttggagtatgttt 232  Q
    ||||||||||||||||||    
T  5298845 gaatgttggagtatgttt 5298828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 5250482 - 5250266
Alignment:
Q  16 gcagagactaacaggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatgga 115  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||| ||   | |||||    
T  5250482 gcagagactaacaggtaagaaatatcttcttgttttggatgatgtctggaatgggagtgtggaatgttgggagcgcttactacttcccttatgccatgga 5250383  T
Q  116 tctaccggaagtaagattattgtgacaacacgtgacaaggaggtagcatcagtcatgaagtccaccaaacttcttcatttgaagcaattggagaagagtg 215  Q
    ||||| |||||||| |||||||| ||||||||| |||||||||| |||||  ||||||||||||||||    ||| ||||  || ||||| || ||||||    
T  5250382 tctactggaagtaaaattattgttacaacacgtaacaaggaggtggcatctatcatgaagtccaccaaggagcttaatttagagaaattgaaggagagtg 5250283  T
Q  216 aatgttggagtatgttt 232  Q
    |||||||||||||||||    
T  5250282 aatgttggagtatgttt 5250266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 15 - 232
Target Start/End: Complemental strand, 5268370 - 5268153
Alignment:
Q  15 agcagagactaacaggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatgg 114  Q
    ||||| |||||||||| ||||||||  ||||| ||||||||||||||||||| || ||||  |||||||||||||||||| ||||||| ||   | ||||    
T  5268370 agcagggactaacaggcaagaaatacttgctttttttggatgatgtctggaatgggagtgaagaatgttgggagcgcttattacttcccttattccatgg 5268271  T
Q  115 atctaccggaagtaagattattgtgacaacacgtgacaaggaggtagcatcagtcatgaagtccaccaaacttcttcatttgaagcaattggagaagagt 214  Q
    |||| | |||||||| |||||||||||||||||| ||| | |||||||| | |||||||| |||||||||   ||| ||||  || || || || |||||    
T  5268270 atctgctggaagtaaaattattgtgacaacacgtaacatgaaggtagcaactgtcatgaactccaccaaaaaccttaatttagagaaactgaaggagagt 5268171  T
Q  215 gaatgttggagtatgttt 232  Q
    ||||||||||||||||||    
T  5268170 gaatgttggagtatgttt 5268153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 22 - 164
Target Start/End: Complemental strand, 8590036 - 8589894
Alignment:
Q  22 actaacaggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctacc 121  Q
    ||||||||| ||||||||  |||||||||| || ||| |||||||||| | ||| |||||||||||||  ||||||||||| |||||| |||||| | |     
T  8590036 actaacaggcaagaaatacttgcttgttttagacgatatctggaacgggaatgcagaatgttgggagcagttactacttccctttaaccatggattttct 8589937  T
Q  122 ggaagtaagattattgtgacaacacgtgacaaggaggtagcat 164  Q
    |||||||||||| | |||||||||||||| |||||||||||||    
T  8589936 ggaagtaagattgtcgtgacaacacgtgaaaaggaggtagcat 8589894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 183
Target Start/End: Original strand, 4388659 - 4388826
Alignment:
Q  22 actaacaggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctacc 121  Q
    |||||| || ||||||||| |||||||||| |||||||||||||| || | || |||| ||||||||||||||||||||||  |   | ||||||||||     
T  4388659 actaactggtaagaaatatttgcttgttttagatgatgtctggaatgggaatgaggaaggttgggagcgcttactacttcccctatgccatggatctact 4388758  T
Q  122 ggaagt------aagattattgtgacaacacgtgacaaggaggtagcatcagtcatgaagtccaccaa 183  Q
    ||||||      || |||||||||||||| ||||||||||||||||||||  ||||||||||||||||    
T  4388759 ggaagtggaagtaaaattattgtgacaactcgtgacaaggaggtagcatctatcatgaagtccaccaa 4388826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 164
Target Start/End: Complemental strand, 6736290 - 6736155
Alignment:
Q  29 ggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagta 128  Q
    |||||||||||  |||||||||| |||||| ||||||| || ||||  |||| ||||||||   |||||||||| |||||| |||||||| | |||||||    
T  6736290 ggaaagaaatacttgcttgttttagatgatatctggaatgggagtgtagaatattgggagcagctactacttccgtttaaccatggatcttctggaagta 6736191  T
Q  129 agattattgtgacaacacgtgacaaggaggtagcat 164  Q
    | ||||| |||||||||||||| |||||||||||||    
T  6736190 aaattatcgtgacaacacgtgaaaaggaggtagcat 6736155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 164
Target Start/End: Complemental strand, 6947569 - 6947434
Alignment:
Q  29 ggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagta 128  Q
    |||||||||||  |||||||||| |||||| ||||||||||   ||| |||||||||||||  ||||| ||||| |||||| |||||||| | |||||||    
T  6947569 ggaaagaaatacttgcttgttttagatgatatctggaacggggatgcagaatgttgggagctgttacttcttccctttaaccatggatcttctggaagta 6947470  T
Q  129 agattattgtgacaacacgtgacaaggaggtagcat 164  Q
    ||||||| |||||||| ||||| ||||||| |||||    
T  6947469 agattatcgtgacaactcgtgaaaaggaggcagcat 6947434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 22 - 164
Target Start/End: Original strand, 6448504 - 6448646
Alignment:
Q  22 actaacaggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctacc 121  Q
    ||||||| ||||||||||  | |||||||| || ||  |||||||||| | ||| ||| |||||||||   |||| ||||| |||||| |||||||| |     
T  6448504 actaacaagaaagaaatactttcttgttttagacgacatctggaacgggaatgcagaacgttgggagcaggtactgcttccgtttaaccatggatcttct 6448603  T
Q  122 ggaagtaagattattgtgacaacacgtgacaaggaggtagcat 164  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  6448604 ggaagtaagattattgtgacaacacgtgaaaaggaggtagcat 6448646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 208
Target Start/End: Complemental strand, 5280939 - 5280802
Alignment:
Q  71 agtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagtaagattattgtgacaacacgtgacaaggaggtagcatcagtca 170  Q
    |||| |||||||||||| |  ||||||||||| |||||  ||||||||   |||||||||||||||||||| ||||||||||| ||||||||| |||| |    
T  5280939 agtggggaatgttgggaacagttactacttccctttaatcatggatcttttggaagtaagattattgtgaccacacgtgacaaagaggtagcagcagtaa 5280840  T
Q  171 tgaagtccaccaaacttcttcatttgaagcaattggag 208  Q
    |||| ||| || || |  ||||||||||||||||||||    
T  5280839 tgaaatcctcccaaatagttcatttgaagcaattggag 5280802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 42 - 174
Target Start/End: Original strand, 8568690 - 8568822
Alignment:
Q  42 tgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagtaagattattgtgac 141  Q
    |||||||| | |||||| ||||||| || | || ||||| ||||||||  ||||||||||| |||||  |||||||| | ||||||||||||||||||||    
T  8568690 tgcttgttctagatgatatctggaatgggaatgaggaattttgggagcagttactacttccatttaatcatggatcttcaggaagtaagattattgtgac 8568789  T
Q  142 aacacgtgacaaggaggtagcatcagtcatgaa 174  Q
    ||||||||||||| | || |||| |||||||||    
T  8568790 aacacgtgacaagcatgttgcattagtcatgaa 8568822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 29 - 164
Target Start/End: Original strand, 6554167 - 6554302
Alignment:
Q  29 ggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagta 128  Q
    |||||||||||  |||||||||| |||||| | ||||| || ||||  |||| ||||||||   |||||||||| |||||| |||||||| | |||||||    
T  6554167 ggaaagaaatacttgcttgttttagatgatatatggaatgggagtgtagaatattgggagcagctactacttccgtttaaccatggatcttctggaagta 6554266  T
Q  129 agattattgtgacaacacgtgacaaggaggtagcat 164  Q
     |||||| |||||||||||||| |||||||||||||    
T  6554267 tgattatcgtgacaacacgtgaaaaggaggtagcat 6554302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 29 - 164
Target Start/End: Original strand, 6479711 - 6479846
Alignment:
Q  29 ggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagta 128  Q
    |||||||||||  |||||||||| |||||| ||||||| || | ||  || | ||||||||  ||||||||||| |||||| ||||||||   |||||||    
T  6479711 ggaaagaaatacttgcttgttttagatgatatctggaatgggaatgtagagtattgggagcagttactacttccatttaaccatggatcttttggaagta 6479810  T
Q  129 agattattgtgacaacacgtgacaaggaggtagcat 164  Q
    ||||||| |||||||||||||| |||||||| ||||    
T  6479811 agattatcgtgacaacacgtgaaaaggaggtggcat 6479846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 32 - 159
Target Start/End: Complemental strand, 8454951 - 8454824
Alignment:
Q  32 aagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagtaaga 131  Q
    ||||||||| |||||||||| || ||| ||||||||||   ||||||| ||||||||   ||||||||||| |||||| ||||||||   ||||||||||    
T  8454951 aagaaatatttgcttgttttagacgatatctggaacggggatgcggaacgttgggagttgttactacttccctttaaccatggatcttttggaagtaaga 8454852  T
Q  132 ttattgtgacaacacgtgacaaggaggt 159  Q
    || | |||||||||||||| ||||||||    
T  8454851 ttgtcgtgacaacacgtgagaaggaggt 8454824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 226
Target Start/End: Complemental strand, 8471858 - 8471664
Alignment:
Q  32 aagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagtaaga 131  Q
    ||||| ||||| |||||| ||||||||||||||||    | || |||| ||||||||   ||||||||||| |||||| |||||||| |    |||||||    
T  8471858 aagaactatctacttgttgtggatgatgtctggaaactgaatgaggaaagttgggagaagttactacttccctttaaccatggatcttctacgagtaaga 8471759  T
Q  132 ttattgtgacaacacgtgacaaggaggtagcatcagtcatgaagtccaccaaacttcttcatttgaagcaattggagaagagtgaatgttggagt 226  Q
    |||||||||||||||| ||||| |||||||||| | |  |||| || || ||  |  || ||||||| ||||||||||||||||| |||||||||    
T  8471758 ttattgtgacaacacgcgacaaagaggtagcattaattgtgaaatctacaaagttatttgatttgaaacaattggagaagagtgactgttggagt 8471664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 226
Target Start/End: Original strand, 6591105 - 6591257
Alignment:
Q  74 gcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagtaagattattgtgacaacacgtgacaaggaggtagcatcagtcatga 173  Q
    |||||||||||||||    |||||||||| |||| | |||||||| | ||||||||||| || |||||||| | ||||||||| ||||||||| |||||     
T  6591105 gcggaatgttgggagatgctactacttccgtttagccatggatcttctggaagtaagatgatggtgacaacgcatgacaaggaagtagcatcaatcatgg 6591204  T
Q  174 agtccaccaaacttcttcatttgaagcaattggagaagagtgaatgttggagt 226  Q
      |||||| | ||  || |||| || ||||||||| ||||||| | |||||||    
T  6591205 gatccacccagctagttgatttaaatcaattggaggagagtgactcttggagt 6591257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 163
Target Start/End: Original strand, 6519954 - 6520025
Alignment:
Q  92 ttactacttccttttaacaatggatctaccggaagtaagattattgtgacaacacgtgacaaggaggtagca 163  Q
    |||||||||||  ||||| |||||||| | |||||||||||||| |||||||||||||| ||| ||||||||    
T  6519954 ttactacttccgcttaaccatggatcttctggaagtaagattatcgtgacaacacgtgaaaagaaggtagca 6520025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 6721852 - 6721942
Alignment:
Q  83 tgggagcgcttactacttccttttaacaatggatctaccggaagtaagattattgtgacaacacgtgacaaggaggtagcatcagtcatga 173  Q
    |||||||  |||||||||| ||||||   ||||||| | ||||||||||| || ||||||||||| |||||||| ||||||||| ||||||    
T  6721852 tgggagcagttactacttctttttaaatgtggatcttcaggaagtaagatgatcgtgacaacacgggacaaggaagtagcatcaatcatga 6721942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 226
Target Start/End: Original strand, 6838633 - 6838827
Alignment:
Q  32 aagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagtaaga 131  Q
    ||||| ||||| |||||| ||||||||||||||||    | || |||| ||||||||   |||||||||||||||||| | |||||| |    |||||||    
T  6838633 aagaactatctacttgttgtggatgatgtctggaaactgaatgaggaaagttgggagacgttactacttccttttaaccaaggatcttctacgagtaaga 6838732  T
Q  132 ttattgtgacaacacgtgacaaggaggtagcatcagtcatgaagtccaccaaacttcttcatttgaagcaattggagaagagtgaatgttggagt 226  Q
    |||||||||||||||| || ||  | ||||||||| |  |||| || || ||  |  || ||||||| |||||||||||||||||  ||||||||    
T  6838733 ttattgtgacaacacgcgataaaaatgtagcatcaattgtgaaatctacaaagttatttgatttgaaacaattggagaagagtgacagttggagt 6838827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 226
Target Start/End: Complemental strand, 6882746 - 6882632
Alignment:
Q  112 tggatctaccggaagtaagattattgtgacaacacgtgacaaggaggtagcatcagtcatgaagtccaccaaacttcttcatttgaagcaattggagaag 211  Q
    ||||||| | ||||||||||| ||||||||||||| ||||||||| ||||||||| ||||||  ||||||   ||  | || || |||||||||||| ||    
T  6882746 tggatcttcaggaagtaagatgattgtgacaacacatgacaaggaagtagcatcaatcatgagatccacccggctaatacacttaaagcaattggaggag 6882647  T
Q  212 agtgaatgttggagt 226  Q
    ||||| | |||||||    
T  6882646 agtgattcttggagt 6882632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 226
Target Start/End: Complemental strand, 6265953 - 6265819
Alignment:
Q  92 ttactacttccttttaacaatggatctaccggaagtaagattattgtgacaacacgtgacaaggaggtagcatcagtcatgaagtccaccaaacttcttc 191  Q
    |||||||||||| |||||  ||||||| |  || ||||||| || |||||||||| |||||  |||||||| | ||| ||||  |||||   ||| ||||    
T  6265953 ttactacttcctcttaaccgtggatcttctcgaggtaagatgatcgtgacaacacatgacagtgaggtagcgttagttatgagatccacacgactacttc 6265854  T
Q  192 atttgaagcaattggagaagagtgaatgttggagt 226  Q
    |||| |||||||||||| ||||||| | |||||||    
T  6265853 atttaaagcaattggaggagagtgactcttggagt 6265819  T

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Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 6142518 - 6142474
Alignment:
Q  122 ggaagtaagattattgtgacaacacgtgacaaggaggtagcatca 166  Q
    ||||||||||| ||||||||||||| ||||||||| |||||||||    
T  6142518 ggaagtaagatgattgtgacaacacatgacaaggaagtagcatca 6142474  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 226
Target Start/End: Complemental strand, 6900316 - 6900216
Alignment:
Q  126 gtaagattattgtgacaacacgtgacaaggaggtagcatcagtcatgaagtccaccaaacttcttcatttgaagcaattggagaagagtgaatgttggag 225  Q
    ||||||| ||||||||||||| ||| | ||| ||||||||| |||| |  || ||  |||| |||||||| || |||||| || ||||||| ||||||||    
T  6900316 gtaagatgattgtgacaacacatgatatggaagtagcatcaatcataagatctacgcaactacttcatttaaaacaattgaaggagagtgattgttggag 6900217  T
Q  226 t 226  Q
    |    
T  6900216 t 6900216  T

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Target: scaffold0425 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 29 - 164
Target Start/End: Original strand, 7206 - 7341
Alignment:
Q  29 ggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagta 128  Q
    |||||||||||  |||||||||| |||||| | ||||| || ||||  |||| ||||||||   |||||||||| |||||| |||||||| | |||||||    
T  7206 ggaaagaaatacttgcttgttttagatgatatatggaatgggagtgtagaatattgggagcagctactacttccgtttaaccatggatcttctggaagta 7305  T
Q  129 agattattgtgacaacacgtgacaaggaggtagcat 164  Q
    | ||||| |||||||||||||| |||||||||||||    
T  7306 aaattatcgtgacaacacgtgaaaaggaggtagcat 7341  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 153
Target Start/End: Original strand, 6573038 - 6573151
Alignment:
Q  40 tctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagtaagattattgtg 139  Q
    |||||||||| | |||||||| ||||| || | || ||| |||| |||||  ||||||||| |||| ||| |||||| |   ||||| ||||||||||||    
T  6573038 tctgcttgttctagatgatgtgtggaaagggaatgaggagtgtttggagcaattactactttctttcaaccatggatttttaggaagcaagattattgtg 6573137  T
Q  140 acaacacgtgacaa 153  Q
    ||||||||||||||    
T  6573138 acaacacgtgacaa 6573151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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