View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16515_low_80 (Length: 248)
Name: NF16515_low_80
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_low_80 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 235
Target Start/End: Original strand, 6316321 - 6316544
Alignment:
| Q |
12 |
atcatcacaatactttgtgtaaagctagttcctccatcatactaaatacacaaaatggacattacactcaaggcagaggcatgaaatcaacacataaatc |
111 |
Q |
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| T |
6316321 |
atcatcacaatactttgtgtaaagctagttcctccatcatactaaatacacaaaatggacattacactcaaggcagaggcatgaaatcaacacataaatc |
6316420 |
T |
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| Q |
112 |
acaattaaaatgatttatccaaccatattagttaaaaaatgagccaccgttttgtacatatcttgcaacataaggttgtttattaccgatggttttatta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6316421 |
acaattaaaatgatttatccaaccatattagttaaaaaatgagccaccgttttgtacatatcttgcaacataaggttgtttattaccgatggttttatta |
6316520 |
T |
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| Q |
212 |
gttatctacattcagatctctgct |
235 |
Q |
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|||||||||||||||||||||||| |
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| T |
6316521 |
gttatctacattcagatctctgct |
6316544 |
T |
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