View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16515_low_84 (Length: 237)

Name: NF16515_low_84
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16515_low_84
NF16515_low_84
[»] chr4 (5 HSPs)
chr4 (15-237)||(23587484-23587706)
chr4 (17-237)||(23596338-23596558)
chr4 (56-205)||(54396650-54396799)
chr4 (54-200)||(9335681-9335827)
chr4 (71-200)||(30775484-30775613)
[»] chr7 (15 HSPs)
chr7 (23-228)||(8102871-8103076)
chr7 (23-225)||(8017172-8017374)
chr7 (56-225)||(39985853-39986022)
chr7 (71-206)||(8610143-8610278)
chr7 (54-200)||(13333246-13333392)
chr7 (59-195)||(8585501-8585637)
chr7 (54-206)||(8602200-8602352)
chr7 (71-194)||(17268177-17268300)
chr7 (77-183)||(8538285-8538391)
chr7 (54-200)||(8667651-8667797)
chr7 (54-200)||(10494164-10494310)
chr7 (56-200)||(8659595-8659739)
chr7 (54-189)||(3147515-3147650)
chr7 (54-177)||(7877523-7877646)
chr7 (54-102)||(8671420-8671468)
[»] chr2 (3 HSPs)
chr2 (54-200)||(16657307-16657453)
chr2 (56-195)||(17716485-17716624)
chr2 (56-144)||(12234977-12235065)
[»] chr1 (1 HSPs)
chr1 (56-200)||(4678350-4678494)
[»] chr6 (1 HSPs)
chr6 (69-195)||(11156507-11156633)
[»] chr8 (2 HSPs)
chr8 (116-189)||(42272433-42272506)
chr8 (80-189)||(42324520-42324629)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 23587484 - 23587706
Alignment:
Q  15 aaatgaaggagattgcagaggcttatcttggtacaacgatcaagaatgccgttgtaactgtgcctgcttacttcaacgattcacagcgtcaagctacaaa 114  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23587484 aaatgaaggagattgcagaggcttatcttggtacaacgattaagaatgccgttgtaactgtgcctgcttacttcaacgattcacaacgtcaagctacaaa 23587583  T
Q  115 agatgccggtgtcatttctggactcaatgtgttgagaattattaatgaacctactgctgctgctattgcttatggtcttgataagaaagctacaagtact 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||     
T  23587584 agatgccggtgtcatttctggactcaatgtgttgagaattattaatgaacctaccgctgctgctattgcttatggtcttgataagaaagctacaagcacg 23587683  T
Q  215 ggtgagaagaacgttcttatttt 237  Q
    |||||||||||||||||||||||    
T  23587684 ggtgagaagaacgttcttatttt 23587706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 23596338 - 23596558
Alignment:
Q  17 atgaaggagattgcagaggcttatcttggtacaacgatcaagaatgccgttgtaactgtgcctgcttacttcaacgattcacagcgtcaagctacaaaag 116  Q
    ||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| || |    
T  23596338 atgaaggagatcgcagaggcttaccttggtacaacaattaagaatgccgttgtaaccgtgcctgcatacttcaacgattcacaacgtcaagctactaagg 23596437  T
Q  117 atgccggtgtcatttctggactcaatgtgttgagaattattaatgaacctactgctgctgctattgcttatggtcttgataagaaagctacaagtactgg 216  Q
    |||| |||||||||||||||||||||||| ||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23596438 atgctggtgtcatttctggactcaatgtgatgagaattattaacgagcccactgctgccgctattgcttatggtcttgataagaaagctacaagtactgg 23596537  T
Q  217 tgagaagaacgttcttatttt 237  Q
    |||||||||||||||||||||    
T  23596538 tgagaagaacgttcttatttt 23596558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 205
Target Start/End: Complemental strand, 54396799 - 54396650
Alignment:
Q  56 aagaatgccgttgtaactgtgcctgcttacttcaacgattcacagcgtcaagctacaaaagatgccggtgtcatttctggactcaatgtgttgagaatta 155  Q
    |||||||| ||||| ||||| |||||||| ||||| ||||| || ||||||||||| |||||||| ||||  ||||| ||  | ||||||||||| ||||    
T  54396799 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggatta 54396700  T
Q  156 ttaatgaacctactgctgctgctattgcttatggtcttgataagaaagct 205  Q
    ||||||| |||||||||||||| |||||||||||| | ||||||||||||    
T  54396699 ttaatgagcctactgctgctgcaattgcttatggtttggataagaaagct 54396650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 200
Target Start/End: Original strand, 9335681 - 9335827
Alignment:
Q  54 tcaagaatgccgttgtaactgtgcctgcttacttcaacgattcacagcgtcaagctacaaaagatgccggtgtcatttctggactcaatgtgttgagaat 153  Q
    |||||||||||||||| || ||||| ||||||||||| ||||| |||||  | || || | |||||| |||   ||| |||| || |||||  |  | ||    
T  9335681 tcaagaatgccgttgttaccgtgccagcttacttcaatgattctcagcgaaaggccaccatagatgctggtactattgctggccttaatgtcattcggat 9335780  T
Q  154 tattaatgaacctactgctgctgctattgcttatggtcttgataaga 200  Q
     || ||||||||||||||||| |||||||| ||||| ||||||||||    
T  9335781 aatcaatgaacctactgctgcagctattgcatatggccttgataaga 9335827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 200
Target Start/End: Complemental strand, 30775613 - 30775484
Alignment:
Q  71 actgtgcctgcttacttcaacgattcacagcgtcaagctacaaaagatgccggtgtcatttctggactcaatgtgttgagaattattaatgaacctactg 170  Q
    |||||||||||||| ||||| ||| |||||||  |||| || |  ||||| |||| |||| |||| || |||||  ||||||| |||||||| || ||||    
T  30775613 actgtgcctgcttatttcaatgatgcacagcgaaaagccactatggatgctggtgccattgctggtcttaatgttatgagaataattaatgagcccactg 30775514  T
Q  171 ctgctgctattgcttatggtcttgataaga 200  Q
    | || |||||||| ||||| ||||| ||||    
T  30775513 cagcagctattgcatatggacttgagaaga 30775484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 228
Target Start/End: Complemental strand, 8103076 - 8102871
Alignment:
Q  23 gagattgcagaggcttatcttggtacaacgatcaagaatgccgttgtaactgtgcctgcttacttcaacgattcacagcgtcaagctacaaaagatgccg 122  Q
    |||||||| || ||||||||||||   || || ||||||||||| || ||||| |||||||||||||| ||||| ||||||||||| || |||||||| |    
T  8103076 gagattgccgaagcttatcttggtgtcaccattaagaatgccgtcgtcactgtccctgcttacttcaatgattctcagcgtcaagcaactaaagatgctg 8102977  T
Q  123 gtgtcatttctggactcaatgtgttgagaattattaatgaacctactgctgctgctattgcttatggtcttgataagaaagctacaagtactggtgagaa 222  Q
    |||| ||  ||||  | ||||| ||||||||||||||||| || ||||||||||||||||| || |||||||| || || || ||||||  |||||||||    
T  8102976 gtgttatcgctggtttaaatgttttgagaattattaatgagccaactgctgctgctattgcctacggtcttgacaaaaaggcgacaagtgttggtgagaa 8102877  T
Q  223 gaacgt 228  Q
    ||||||    
T  8102876 gaacgt 8102871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 23 - 225
Target Start/End: Original strand, 8017172 - 8017374
Alignment:
Q  23 gagattgcagaggcttatcttggtacaacgatcaagaatgccgttgtaactgtgcctgcttacttcaacgattcacagcgtcaagctacaaaagatgccg 122  Q
    |||||||| || ||||| || ||| ||||  | |||||||||||||| || || || ||||||||||| ||||| ||||||||||| ||||| |||||||    
T  8017172 gagattgctgaagcttacctcggttcaactgtgaagaatgccgttgttacagttccagcttacttcaatgattcgcagcgtcaagccacaaaggatgccg 8017271  T
Q  123 gtgtcatttctggactcaatgtgttgagaattattaatgaacctactgctgctgctattgcttatggtcttgataagaaagctacaagtactggtgagaa 222  Q
    |||||||| | ||||||||||| ||||||||||| || || || || ||||| |||||||| || || ||||| || || |||||||||  ||| |||||    
T  8017272 gtgtcattgcaggactcaatgttttgagaattatcaacgagccaacagctgcagctattgcgtacggacttgacaaaaaggctacaagtgttggcgagaa 8017371  T
Q  223 gaa 225  Q
    |||    
T  8017372 gaa 8017374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 56 - 225
Target Start/End: Complemental strand, 39986022 - 39985853
Alignment:
Q  56 aagaatgccgttgtaactgtgcctgcttacttcaacgattcacagcgtcaagctacaaaagatgccggtgtcatttctggactcaatgtgttgagaatta 155  Q
    |||||||| ||||| ||||| ||||||||||| || || || |||||||||||||| || ||||| || || ||| | || || |||||  || ||||||    
T  39986022 aagaatgctgttgttactgtccctgcttactttaatgactcccagcgtcaagctaccaaggatgctggagttattgccggtcttaatgtcatgcgaatta 39985923  T
Q  156 ttaatgaacctactgctgctgctattgcttatggtcttgataagaaagctacaagtactggtgagaagaa 225  Q
    | ||||| || ||||||||||| ||||||||||||||||| |||||||| || |||  ||| ||||||||    
T  39985922 tcaatgagcccactgctgctgccattgcttatggtcttgacaagaaagcaaccagtgttggagagaagaa 39985853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 206
Target Start/End: Complemental strand, 8610278 - 8610143
Alignment:
Q  71 actgtgcctgcttacttcaacgattcacagcgtcaagctacaaaagatgccggtgtcatttctggactcaatgtgttgagaattattaatgaacctactg 170  Q
    |||||||||||||| || || ||||| |||||  |||| ||||||||||| |||||||||||||| || |||||  |  | ||||| |||||||| || |    
T  8610278 actgtgcctgcttattttaatgattctcagcggaaagccacaaaagatgctggtgtcatttctggccttaatgtaatccggattatcaatgaaccaacgg 8610179  T
Q  171 ctgctgctattgcttatggtcttgataagaaagcta 206  Q
    |||| ||| |||| ||||||||| | |||| |||||    
T  8610178 ctgcggctcttgcatatggtcttcagaagagagcta 8610143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 200
Target Start/End: Original strand, 13333246 - 13333392
Alignment:
Q  54 tcaagaatgccgttgtaactgtgcctgcttacttcaacgattcacagcgtcaagctacaaaagatgccggtgtcatttctggactcaatgtgttgagaat 153  Q
    |||||||||||||||| |||||||| ||||||||||| ||||| |||||  | || || | |||||| ||||  ||| |||| || ||| |  |  ||||    
T  13333246 tcaagaatgccgttgttactgtgccggcttacttcaatgattctcagcgaaaggccaccatagatgctggtgctattgctggccttaatatcattcgaat 13333345  T
Q  154 tattaatgaacctactgctgctgctattgcttatggtcttgataaga 200  Q
     || ||||||||||||||||| |||||||| ||||| ||||| ||||    
T  13333346 aatcaatgaacctactgctgcagctattgcatatggccttgacaaga 13333392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 195
Target Start/End: Original strand, 8585501 - 8585637
Alignment:
Q  59 aatgccgttgtaactgtgcctgcttacttcaacgattcacagcgtcaagctacaaaagatgccggtgtcatttctggactcaatgtgttgagaattatta 158  Q
    ||||| ||||| |||||||||||||| ||||| ||||| |||||  |||| || |  ||||| |||| |||| |||| || |||||  |||| || || |    
T  8585501 aatgcagttgtgactgtgcctgcttatttcaatgattctcagcgaaaagccaccatggatgctggtgccattgctggccttaatgttatgaggataatca 8585600  T
Q  159 atgaacctactgctgctgctattgcttatggtcttga 195  Q
    ||||||| |||||||| |||||||| ||||| |||||    
T  8585601 atgaacccactgctgcagctattgcatatggccttga 8585637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 206
Target Start/End: Complemental strand, 8602352 - 8602200
Alignment:
Q  54 tcaagaatgccgttgtaactgtgcctgcttacttcaacgattcacagcgtcaagctacaaaagatgccggtgtcatttctggactcaatgtgttgagaat 153  Q
    |||||||||| ||||| |||||||| ||||| || || ||||| |||||  |||| ||||||||||| |||| |||| |||| ||||||||  || | ||    
T  8602352 tcaagaatgcagttgttactgtgccggcttattttaatgattctcagcgaaaagccacaaaagatgctggtgccattgctggtctcaatgtaatgcggat 8602253  T
Q  154 tattaatgaacctactgctgctgctattgcttatggtcttgataagaaagcta 206  Q
     || ||||| || ||||| |||||| |||| ||||| ||| | |||| |||||    
T  8602252 aatcaatgagccaactgcagctgctcttgcatatggccttcaaaagagagcta 8602200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 194
Target Start/End: Complemental strand, 17268300 - 17268177
Alignment:
Q  71 actgtgcctgcttacttcaacgattcacagcgtcaagctacaaaagatgccggtgtcatttctggactcaatgtgttgagaattattaatgaacctactg 170  Q
    ||||| || ||||||||||||||||| |||||  |||| || | |||||| ||||||||| |||| || ||||| ||||   | || |||||||| ||||    
T  17268300 actgtcccggcttacttcaacgattctcagcgaaaagccaccatagatgctggtgtcattgctggccttaatgtattgaaggtaatcaatgaaccaactg 17268201  T
Q  171 ctgctgctattgcttatggtcttg 194  Q
    |||| |||||||| ||||| ||||    
T  17268200 ctgcagctattgcatatggccttg 17268177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 183
Target Start/End: Complemental strand, 8538391 - 8538285
Alignment:
Q  77 cctgcttacttcaacgattcacagcgtcaagctacaaaagatgccggtgtcatttctggactcaatgtgttgagaattattaatgaacctactgctgctg 176  Q
    |||||||| ||||| |||||||||||   ||| || |||||||| ||||||||| |||| ||||||||  || | || || ||||||||||| |||||||    
T  8538391 cctgcttatttcaatgattcacagcgaagagccaccaaagatgctggtgtcattgctggcctcaatgtaatgcggataatcaatgaacctacagctgctg 8538292  T
Q  177 ctattgc 183  Q
    || ||||    
T  8538291 ctcttgc 8538285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 200
Target Start/End: Complemental strand, 8667797 - 8667651
Alignment:
Q  54 tcaagaatgccgttgtaactgtgcctgcttacttcaacgattcacagcgtcaagctacaaaagatgccggtgtcatttctggactcaatgtgttgagaat 153  Q
    |||||||||||||||| |||||||| ||||||||||| ||||| |||||  | || || | |||||| |||   ||| ||||||| |||||  |  | ||    
T  8667797 tcaagaatgccgttgttactgtgccagcttacttcaatgattctcagcgaaaggccaccatagatgctggtactattgctggacttaatgtcattcggat 8667698  T
Q  154 tattaatgaacctactgctgctgctattgcttatggtcttgataaga 200  Q
     || |||||||||||||| || |||||||| ||||| ||||| ||||    
T  8667697 aatcaatgaacctactgcggcagctattgcatatggccttgacaaga 8667651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 200
Target Start/End: Original strand, 10494164 - 10494310
Alignment:
Q  54 tcaagaatgccgttgtaactgtgcctgcttacttcaacgattcacagcgtcaagctacaaaagatgccggtgtcatttctggactcaatgtgttgagaat 153  Q
    |||||||||| ||||| |||||||| ||||||||||||||||| || ||  | ||||| |  ||||| ||||  ||| |||| || |||||  |  | ||    
T  10494164 tcaagaatgctgttgttactgtgccggcttacttcaacgattctcaacgaaaggctactattgatgctggtgctattgctggccttaatgtcattcggat 10494263  T
Q  154 tattaatgaacctactgctgctgctattgcttatggtcttgataaga 200  Q
     || ||||||||||||||||| |||||||| ||||| ||||| ||||    
T  10494264 aatcaatgaacctactgctgcagctattgcatatggccttgacaaga 10494310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 200
Target Start/End: Complemental strand, 8659739 - 8659595
Alignment:
Q  56 aagaatgccgttgtaactgtgcctgcttacttcaacgattcacagcgtcaagctacaaaagatgccggtgtcatttctggactcaatgtg-ttgagaatt 154  Q
    |||||||| ||||| || |||||||| || ||||| ||||| |||||  |||| || | |||| |||||| |||| |||| || |||||  || ||| |     
T  8659739 aagaatgctgttgttacagtgcctgcatagttcaatgattctcagcgaaaagccaccatagattccggtgccattgctggccttaatgtcattcaga-ta 8659641  T
Q  155 attaatgaacctactgctgctgctattgcttatggtcttgataaga 200  Q
    |||||||||||||||||||| |||||||| |||||| |||| ||||    
T  8659640 attaatgaacctactgctgcagctattgcatatggttttgacaaga 8659595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 189
Target Start/End: Complemental strand, 3147650 - 3147515
Alignment:
Q  54 tcaagaatgccgttgtaactgtgcctgcttacttcaacgattcacagcgtcaagctacaaaagatgccggtgtcatttctggactcaatgtgttgagaat 153  Q
    |||||||||| ||||| || || |||||||| ||||| ||| | |||||  |||| |||| |||||| ||||| ||| |||| || ||| |  || | ||    
T  3147650 tcaagaatgcagttgttaccgtacctgcttatttcaatgatgctcagcggaaagcgacaatagatgctggtgttattgctggccttaatattatgcggat 3147551  T
Q  154 tattaatgaacctactgctgctgctattgcttatgg 189  Q
     || ||||||||||||||||| |||||||| |||||    
T  3147550 aatcaatgaacctactgctgcagctattgcgtatgg 3147515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 177
Target Start/End: Original strand, 7877523 - 7877646
Alignment:
Q  54 tcaagaatgccgttgtaactgtgcctgcttacttcaacgattcacagcgtcaagctacaaaagatgccggtgtcatttctggactcaatgtgttgagaat 153  Q
    |||||||||| ||||| |||||||| ||||| ||||| ||||| || ||  |||| ||||||||||| ||||   || | || ||||||||  || | ||    
T  7877523 tcaagaatgcagttgttactgtgccggcttatttcaatgattctcaacgaaaagccacaaaagatgctggtgcagttgccggcctcaatgttatgcggat 7877622  T
Q  154 tattaatgaacctactgctgctgc 177  Q
     ||||||||||| |||||||||||    
T  7877623 aattaatgaaccaactgctgctgc 7877646  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 8671420 - 8671468
Alignment:
Q  54 tcaagaatgccgttgtaactgtgcctgcttacttcaacgattcacagcg 102  Q
    |||||||||||||||| || ||||| ||||||||||| ||||| |||||    
T  8671420 tcaagaatgccgttgttaccgtgccagcttacttcaatgattctcagcg 8671468  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 54 - 200
Target Start/End: Original strand, 16657307 - 16657453
Alignment:
Q  54 tcaagaatgccgttgtaactgtgcctgcttacttcaacgattcacagcgtcaagctacaaaagatgccggtgtcatttctggactcaatgtgttgagaat 153  Q
    |||||||||| ||||| |||||||| ||||||||||| ||||| |||||  |||| || | |||||| |||| |||  |||| || |||||  |  ||||    
T  16657307 tcaagaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgccatcgctggccttaatgtcattcgaat 16657406  T
Q  154 tattaatgaacctactgctgctgctattgcttatggtcttgataaga 200  Q
    ||| ||||||||||||||||| |||||||| ||||||||||| ||||    
T  16657407 tatcaatgaacctactgctgcagctattgcatatggtcttgacaaga 16657453  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 195
Target Start/End: Original strand, 17716485 - 17716624
Alignment:
Q  56 aagaatgccgttgtaactgtgcctgcttacttcaacgattcacagcgtcaagctacaaaagatgccggtgtcatttctggactcaatgtgttgagaatta 155  Q
    |||||||||||||| ||||| ||||||||||| ||   ||| ||| | |||||||| ||  |||| ||||  ||| |||| || ||| |  |||||||||    
T  17716485 aagaatgccgttgttactgtccctgcttactttaatttttctcagagacaagctactaagcatgctggtgctattgctggtcttaatttcatgagaatta 17716584  T
Q  156 ttaatgaacctactgctgctgctattgcttatggtcttga 195  Q
    ||||||| || |||||||| || |||||||||||| ||||    
T  17716585 ttaatgagcccactgctgcagccattgcttatggttttga 17716624  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 12235065 - 12234977
Alignment:
Q  56 aagaatgccgttgtaactgtgcctgcttacttcaacgattcacagcgtcaagctacaaaagatgccggtgtcatttctggactcaatgt 144  Q
    |||||||| ||||| || ||||||||||| ||||| ||||| || ||  |||| || | |||||| ||||||||| |||| ||||||||    
T  12235065 aagaatgcagttgttaccgtgcctgcttatttcaatgattctcaacgaaaagcaactatagatgctggtgtcattgctggcctcaatgt 12234977  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 200
Target Start/End: Original strand, 4678350 - 4678494
Alignment:
Q  56 aagaatgccgttgtaactgtgcctgcttacttcaacgattcacagcgtcaagctacaaaagatgccggtgtcatttctggactcaatgtgttgagaatta 155  Q
    ||||||| |||||| ||||||||||| |||||||| ||||| || ||  ||||||| | |||||| |||| |||| ||||||| |||||  |   ||| |    
T  4678350 aagaatgtcgttgttactgtgcctgcatacttcaatgattctcaacgaaaagctaccatagatgctggtgccattgctggacttaatgtcattcaaataa 4678449  T
Q  156 ttaatgaacctactgctgctgctattgcttatggtcttgataaga 200  Q
    | || |||||||||| ||| |||||||| |||||| |||| ||||    
T  4678450 tcaacgaacctactgttgcagctattgcatatggttttgacaaga 4678494  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 195
Target Start/End: Complemental strand, 11156633 - 11156507
Alignment:
Q  69 taactgtgcctgcttacttcaacgattcacagcgtcaagctacaaaagatgccggtgtcatttctggactcaatgtgttgagaattattaatgaacctac 168  Q
    ||||||||||||||||||| || || ||||| || ||  | ||  ||||||| ||||| ||| |||| ||||||||  || |||| || ||||| ||| |    
T  11156633 taactgtgcctgcttactttaatgactcacaacgccagtccacccaagatgcgggtgttattgctggcctcaatgttatgcgaataatcaatgagccttc 11156534  T
Q  169 tgctgctgctattgcttatggtcttga 195  Q
    ||| ||||| ||||| |||||||||||    
T  11156533 tgcagctgcaattgcatatggtcttga 11156507  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 42272433 - 42272506
Alignment:
Q  116 gatgccggtgtcatttctggactcaatgtgttgagaattattaatgaacctactgctgctgctattgcttatgg 189  Q
    ||||||||||||||| ||||  | ||||||   ||||| ||||||||||| || |||||||| |||||||||||    
T  42272433 gatgccggtgtcattgctggtttgaatgtggctagaatcattaatgaacccaccgctgctgccattgcttatgg 42272506  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 189
Target Start/End: Original strand, 42324520 - 42324629
Alignment:
Q  80 gcttacttcaacgattcacagcgtcaagctacaaaagatgccggtgtcatttctggactcaatgtgttgagaattattaatgaacctactgctgctgcta 179  Q
    ||||||||||| ||| | ||| | || || || || ||||||||||||||| ||||  | ||||||   ||||| ||||| |||||||| |||||||| |    
T  42324520 gcttacttcaatgatgctcagaggcaggccaccaaggatgccggtgtcattgctggtttgaatgtggctagaatcattaacgaacctaccgctgctgcca 42324619  T
Q  180 ttgcttatgg 189  Q
    ||||||||||    
T  42324620 ttgcttatgg 42324629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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