View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16515_low_85 (Length: 237)

Name: NF16515_low_85
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16515_low_85
NF16515_low_85
[»] chr8 (4 HSPs)
chr8 (29-162)||(8789527-8789660)
chr8 (25-146)||(21519279-21519399)
chr8 (91-176)||(21519149-21519234)
chr8 (30-70)||(27084504-27084544)
[»] chr3 (3 HSPs)
chr3 (26-137)||(38639900-38640011)
chr3 (23-178)||(36432971-36433126)
chr3 (25-70)||(29438249-29438294)
[»] chr5 (6 HSPs)
chr5 (25-146)||(9991661-9991782)
chr5 (26-161)||(34731551-34731695)
chr5 (26-134)||(36560502-36560610)
chr5 (30-71)||(15974189-15974230)
chr5 (30-70)||(18768414-18768454)
chr5 (30-70)||(28866480-28866520)
[»] chr6 (2 HSPs)
chr6 (26-146)||(33582512-33582632)
chr6 (26-70)||(14533475-14533519)
[»] chr4 (3 HSPs)
chr4 (25-125)||(54028833-54028933)
chr4 (30-70)||(29096101-29096141)
chr4 (30-70)||(37987239-37987279)
[»] chr2 (2 HSPs)
chr2 (30-177)||(24489043-24489190)
chr2 (26-179)||(32983635-32983788)
[»] scaffold0006 (2 HSPs)
scaffold0006 (26-84)||(148325-148383)
scaffold0006 (115-175)||(148221-148281)
[»] chr7 (4 HSPs)
chr7 (45-143)||(28756068-28756166)
chr7 (56-140)||(47535171-47535255)
chr7 (26-70)||(19362396-19362440)
chr7 (59-143)||(37127593-37127676)
[»] chr1 (3 HSPs)
chr1 (26-84)||(13658564-13658622)
chr1 (58-178)||(42138805-42138926)
chr1 (115-175)||(13658460-13658520)


Alignment Details
Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 29 - 162
Target Start/End: Original strand, 8789527 - 8789660
Alignment:
Q  29 gggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttactatatatacactattatgcctaaacatacaacaacttctcagtggttgt 128  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||  ||||| ||||||||||||||||     
T  8789527 gggcggatctcttcaggggcaggcaagtgccatgacatcccctgaagttactatatatacactattatgcttaaatgtacaataacttctcagtggttgc 8789626  T
Q  129 agtggtaagggggtgccttgatatactgaaggtc 162  Q
    ||||||||||||||||||||||||||||||||||    
T  8789627 agtggtaagggggtgccttgatatactgaaggtc 8789660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 21519279 - 21519399
Alignment:
Q  25 gcaggggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttactatatatacactattatgcctaaacatacaacaacttctcagtgg 124  Q
    ||||||||||||||  ||| || |||||||| | ||||||||||||  || ||||||||| || | |||||| ||||||||||||| || |||| |||||    
T  21519279 gcaggggcggatcttctcaaggacaggcaggggtcatggcatcccccaaatttactatatgtatagtattatacctaaacatacaataaattcttagtgg 21519378  T
Q  125 ttgtagtggtaagggggtgcct 146  Q
    ||||||||| ||||||||||||    
T  21519379 ttgtagtgg-aagggggtgcct 21519399  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 91 - 176
Target Start/End: Original strand, 21519149 - 21519234
Alignment:
Q  91 tattatgcctaaacatacaacaacttctcagtggttgtagtggtaagggggtgccttgatatactgaaggtcgtgtgttcgaccct 176  Q
    ||||||||||||||||||||||| |||| |||||||| ||||| ||||||||||||   ||| |  ||||||||||||||||||||    
T  21519149 tattatgcctaaacatacaacaaattcttagtggttgcagtgggaagggggtgcctcagtatgcctaaggtcgtgtgttcgaccct 21519234  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 27084544 - 27084504
Alignment:
Q  30 ggcggatctcttcaggggcaggcaggtgccatggcatcccc 70  Q
    ||||||||||||  |||| ||||||||||||||||||||||    
T  27084544 ggcggatctctttgggggaaggcaggtgccatggcatcccc 27084504  T

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Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 26 - 137
Target Start/End: Original strand, 38639900 - 38640011
Alignment:
Q  26 caggggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttactatatatacactattatgcctaaacatacaacaacttctcagtggt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||    
T  38639900 caggggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttactatatatacactattatgcctaaatgtacaacaacttctcaatggt 38639999  T
Q  126 tgtagtggtaag 137  Q
    || |||||||||    
T  38640000 tgcagtggtaag 38640011  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 178
Target Start/End: Complemental strand, 36433126 - 36432971
Alignment:
Q  23 atgcaggggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttactatatatacactattatgcctaaacatacaacaacttctcagt 122  Q
    |||||||||| |||||  ||| ||||||||||||||||||||||| |||||| ||||||||| || |  |||||||| | || ||||  || |||||| |    
T  36433126 atgcaggggcagatcttctcaagggcaggcaggtgccatggcatcacctgaatttactatatttatagcattatgcccatacttacagtaaattctcaat 36433027  T
Q  123 ggttgtagtggtaagggggtgccttgatatactgaaggtcgtgtgttcgacccttt 178  Q
    ||||| |||||||| |||||||||  ||||  |||||||||  |||| ||||||||    
T  36433026 ggttgcagtggtaaaggggtgcctctatatggtgaaggtcgcatgtttgacccttt 36432971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 29438249 - 29438294
Alignment:
Q  25 gcaggggcggatctcttcaggggcaggcaggtgccatggcatcccc 70  Q
    |||||||||||||||||  |||||||||||||||||||| ||||||    
T  29438249 gcaggggcggatctctttgggggcaggcaggtgccatggtatcccc 29438294  T

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Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 9991661 - 9991782
Alignment:
Q  25 gcaggggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttactatatatacactattatgcctaaacatacaacaacttctcagtgg 124  Q
    ||||||||||||||  ||  ||||||||| |||||||||||||||||||| |||||||||||||| ||||||||| | |  ||||| || ||||||||||    
T  9991661 gcaggggcggatcttctctagggcaggcaagtgccatggcatcccctgaatttactatatatacagtattatgcccatatttacaataaattctcagtgg 9991760  T
Q  125 ttgtagtggtaagggggtgcct 146  Q
    ||||||||| || |||||||||    
T  9991761 ttgtagtggaaaaggggtgcct 9991782  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 26 - 161
Target Start/End: Original strand, 34731551 - 34731695
Alignment:
Q  26 caggggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttac---------tatatatacactattatgcctaaacatacaacaactt 116  Q
    |||||||||||||||||||||||| |||||||||| | |||||||| |||||||         |||||||| ||||||||| ||||| |||||| |||||    
T  34731551 caggggcggatctcttcaggggcatgcaggtgccaggacatcccctaaagttacgttactatatatatatatactattatgtctaaatatacaataactt 34731650  T
Q  117 ctcagtggttgtagtggtaagggggtgccttgatatactgaaggt 161  Q
    || || ||||| ||||| ||| ||||| |||||||||||||||||    
T  34731651 cttaggggttgcagtggaaagagggtgtcttgatatactgaaggt 34731695  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 134
Target Start/End: Original strand, 36560502 - 36560610
Alignment:
Q  26 caggggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttactatatatacactattatgcctaaacatacaacaacttctcagtggt 125  Q
    ||||||| |||||  ||| |||||| |||||| |||||||||||||||| |||||||||  | |  |||||||| | || || || || |||||||||||    
T  36560502 caggggcagatcttctcaagggcagacaggtgtcatggcatcccctgaatttactatattgatagcattatgcccatacttataataaattctcagtggt 36560601  T
Q  126 tgtagtggt 134  Q
    |||||||||    
T  36560602 tgtagtggt 36560610  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 15974230 - 15974189
Alignment:
Q  30 ggcggatctcttcaggggcaggcaggtgccatggcatcccct 71  Q
    |||||||||  | |||||||||||||||||||||||||||||    
T  15974230 ggcggatcttctaaggggcaggcaggtgccatggcatcccct 15974189  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 18768454 - 18768414
Alignment:
Q  30 ggcggatctcttcaggggcaggcaggtgccatggcatcccc 70  Q
    |||||||||  | ||||||||||||||||||||||||||||    
T  18768454 ggcggatcttctaaggggcaggcaggtgccatggcatcccc 18768414  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 28866520 - 28866480
Alignment:
Q  30 ggcggatctcttcaggggcaggcaggtgccatggcatcccc 70  Q
    |||||||||  | ||||||||||||||||||||||||||||    
T  28866520 ggcggatcttctaaggggcaggcaggtgccatggcatcccc 28866480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 146
Target Start/End: Original strand, 33582512 - 33582632
Alignment:
Q  26 caggggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttactatatatacactattatgcctaaacatacaacaacttctcagtggt 125  Q
    |||||||||||||  ||| ||||||||||||||||||||||||||| || ||||||||| || | ||||||||| | || | ||| || |||||||||||    
T  33582512 caggggcggatcttctcaagggcaggcaggtgccatggcatcccctaaacttactatatttatagtattatgcccatactttcaataaattctcagtggt 33582611  T
Q  126 tgtagtggtaagggggtgcct 146  Q
    || ||||||||||||||||||    
T  33582612 tgcagtggtaagggggtgcct 33582632  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 14533475 - 14533519
Alignment:
Q  26 caggggcggatctcttcaggggcaggcaggtgccatggcatcccc 70  Q
    ||||||||||||||||  |||||||||||||||||||| ||||||    
T  14533475 caggggcggatctctttgggggcaggcaggtgccatggtatcccc 14533519  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 54028833 - 54028933
Alignment:
Q  25 gcaggggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttactatatatacactattatgcctaaacatacaacaacttctcagtgg 124  Q
    ||||||||||||||||||| |||||| ||||||||||| |||||   ||||||||||| |||| ||||||||||||||| ||||||||||||||| ||||    
T  54028833 gcaggggcggatctcttcaagggcagacaggtgccatgacatccttcgaagttactatttatatactattatgcctaaatatacaacaacttctcggtgg 54028932  T
Q  125 t 125  Q
    |    
T  54028933 t 54028933  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 29096101 - 29096141
Alignment:
Q  30 ggcggatctcttcaggggcaggcaggtgccatggcatcccc 70  Q
    |||||||||  | ||||||||||||||||||||||||||||    
T  29096101 ggcggatcttctaaggggcaggcaggtgccatggcatcccc 29096141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 37987279 - 37987239
Alignment:
Q  30 ggcggatctcttcaggggcaggcaggtgccatggcatcccc 70  Q
    |||||||||  | ||||||||||||||||||||||||||||    
T  37987279 ggcggatcttctaaggggcaggcaggtgccatggcatcccc 37987239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 30 - 177
Target Start/End: Original strand, 24489043 - 24489190
Alignment:
Q  30 ggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttactatatatacactattatgcctaaacatacaacaacttctcagtggttgta 129  Q
    |||||||||  ||| || |||| ||| |||||| |||||||  || ||||||||| || | ||||||||||| | ||||||||| |||| ||||||||||    
T  24489043 ggcggatcttctcatggacaggtaggggccatgacatcccccaaatttactatatgtatagtattatgcctatatatacaacaaattcttagtggttgta 24489142  T
Q  130 gtggtaagggggtgccttgatatactgaaggtcgtgtgttcgaccctt 177  Q
    |||| |||||||||| ||  ||| |  |||||||||||||||||||||    
T  24489143 gtgggaagggggtgcttttttatgccaaaggtcgtgtgttcgaccctt 24489190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 179
Target Start/End: Complemental strand, 32983788 - 32983635
Alignment:
Q  26 caggggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttactatatatacactattatgcctaaacatacaacaacttctcagtggt 125  Q
    |||||| ||||||  ||| ||||||| ||||| ||||||| |||||||| ||||||||| || | ||||||| | | || | ||| || || | ||||||    
T  32983788 caggggtggatcttctcaagggcaggaaggtgtcatggcaacccctgaacttactatatttatagtattatgtccatactttcaataaatttttagtggt 32983689  T
Q  126 tgtagtggtaagggggtgccttgatatactgaaggtcgtgtgttcgaccctttt 179  Q
    || ||||||||||||||||||  ||||| |||||||||  |||||| |||||||    
T  32983688 tgcagtggtaagggggtgcctctatataatgaaggtcgcatgttcgcccctttt 32983635  T

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Target: scaffold0006 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 148383 - 148325
Alignment:
Q  26 caggggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttactatat 84  Q
    |||||||||||||  ||| |||||||||||||||||||||||||||||| |||||||||    
T  148383 caggggcggatcttctcaagggcaggcaggtgccatggcatcccctgaacttactatat 148325  T

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Target: scaffold0006; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 148281 - 148221
Alignment:
Q  115 ttctcagtggttgtagtggtaagggggtgccttgatatactgaaggtcgtgtgttcgaccc 175  Q
    ||||||||||||| ||||||||||||||||||  ||||  ||||||| |  ||||||||||    
T  148281 ttctcagtggttgcagtggtaagggggtgcctctatatgatgaaggtagcatgttcgaccc 148221  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 143
Target Start/End: Complemental strand, 28756166 - 28756068
Alignment:
Q  45 gggcaggcaggtgccatggcatcccctgaagttactatatatacactattatgcctaaacatacaacaacttctcagtggttgtagtggtaagggggtg 143  Q
    ||||||||||||||||||||||||| |||| ||||||||| || |  |||||||| | |  ||||| || |||| |||||||| |||||||||||||||    
T  28756166 gggcaggcaggtgccatggcatcccttgaatttactatatttatagcattatgcccataattacaataaattcttagtggttgcagtggtaagggggtg 28756068  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 140
Target Start/End: Original strand, 47535171 - 47535255
Alignment:
Q  56 tgccatggcatcccctgaagttactatatatacactattatgcctaaacatacaacaacttctcagtggttgtagtggtaagggg 140  Q
    |||||||||||||||   | ||||||||| || | ||||||||||||||||||||||| |||| |||||| ||||||| ||||||    
T  47535171 tgccatggcatcccccagatttactatatgtatagtattatgcctaaacatacaacaaattcttagtggtagtagtggaaagggg 47535255  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 19362396 - 19362440
Alignment:
Q  26 caggggcggatctcttcaggggcaggcaggtgccatggcatcccc 70  Q
    ||||||||||||||||  |||||||||||||||||||| ||||||    
T  19362396 caggggcggatctctttgggggcaggcaggtgccatggtatcccc 19362440  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 37127676 - 37127593
Alignment:
Q  59 catggcatcccctgaagttactatatatacactattatgcctaaacatacaacaacttctcagtggttgtagtggtaagggggtg 143  Q
    ||||||||||| | || |||||||||||| | ||||||||||| | || ||| || |||| |||||||| ||||| |||||||||    
T  37127676 catggcatccc-taaatttactatatatatagtattatgcctatatattcaataaattcttagtggttgcagtggaaagggggtg 37127593  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 13658622 - 13658564
Alignment:
Q  26 caggggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttactatat 84  Q
    |||||||||||||  ||| |||||||||||||||||||||||||||||| |||||||||    
T  13658622 caggggcggatcttctcaagggcaggcaggtgccatggcatcccctgaacttactatat 13658564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 178
Target Start/End: Complemental strand, 42138926 - 42138805
Alignment:
Q  58 ccatggcatcccctgaagttactatatatacact--attatgcctaaacatacaacaacttctcagtggttgtagtggtaagggggtgccttgatatact 155  Q
    |||||||||||||  || |||||||||||| |    |||||||||||||||||||||| |||| ||||| || ||||| || ||||||||||  ||| |     
T  42138926 ccatggcatcccccaaatttactatatatatatagcattatgcctaaacatacaacaaattcttagtggatgcagtgg-aaaggggtgccttagtatgcc 42138828  T
Q  156 gaaggtcgtgtgttcgacccttt 178  Q
     |||||||||  |||||||||||    
T  42138827 taaggtcgtgcattcgacccttt 42138805  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 13658520 - 13658460
Alignment:
Q  115 ttctcagtggttgtagtggtaagggggtgccttgatatactgaaggtcgtgtgttcgaccc 175  Q
    ||||||||||||| ||||||||||||||||||  ||||  ||||||| |  ||||||||||    
T  13658520 ttctcagtggttgcagtggtaagggggtgcctctatatgatgaaggtagcatgttcgaccc 13658460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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