View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16515_low_9 (Length: 585)
Name: NF16515_low_9
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-165; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 19 - 332
Target Start/End: Original strand, 6854743 - 6855059
Alignment:
| Q |
19 |
tacatgccaaaacaaaacatatggagcttgacatattctttctcagagagattcatcagccaaaacctacttgtcaagcacatgccagctcttgactaa- |
117 |
Q |
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| T |
6854743 |
tacatgccaaaacaaaacatatggagcttgacatattctttctcagagagattcatcagccaaaacctacttgtcaagcacataccagctcttgactaat |
6854842 |
T |
|
| Q |
118 |
--gtggtagatgttaggaagcttgatttgaatttccaagaaagaacacctgatttaagaaatagatcgaataggagaaaacatcccctccaagggttccc |
215 |
Q |
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| T |
6854843 |
aagtggtagatgttaggaagcttgatttgaatttccaagaaagaacacctgatttaagaaatagatcgaataggagaaaacatcccctccaagggttccc |
6854942 |
T |
|
| Q |
216 |
ttcgcattaggaaatactacaacgttcaaagatggttctctctatcattttcttcccttatttatacaaaattaacaaaggaaacaactctaatgaattt |
315 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6854943 |
ttcacattaggaaatactacaacgttcaaagatggttctctctatcattttcttcccttatttatacaaaattaacaaaggaaacaactctaatgaattt |
6855042 |
T |
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| Q |
316 |
tgtgcttgtactatatc |
332 |
Q |
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||||||||||||||||| |
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| T |
6855043 |
tgtgcttgtactatatc |
6855059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 385 - 569
Target Start/End: Original strand, 6855057 - 6855241
Alignment:
| Q |
385 |
atcccttcaaagcttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagctcgaatgactctttctcg |
484 |
Q |
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| T |
6855057 |
atcccttcaaagcttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagctcgaatgactctttctcg |
6855156 |
T |
|
| Q |
485 |
aacagcaccaccagataaaacaccaccatatgcaaattttacaatccttctgcttctaggtaactttgatctcttgtactctgtg |
569 |
Q |
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| T |
6855157 |
aacagcaccaccagataaaacaccaccatatgcaaattttacaatccttctgcttctaggtaactttgatctcttgtactctgtg |
6855241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 283 - 518
Target Start/End: Complemental strand, 6823258 - 6823024
Alignment:
| Q |
283 |
aaaattaacaaaggaaacaactctaatgaattttgtgcttgtactata-tcactcaaacctaaaactcctccaaaaagatatgtatctcctttcataaaa |
381 |
Q |
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|||||| ||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| ||||||||||| |||||||||||||| |
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| T |
6823258 |
aaaattcacaaagggaacaactctaataaattttgtgcttgtactataatcactcaaacctaaaattcctctgaaaagatatgt--ctcctttcataaaa |
6823161 |
T |
|
| Q |
382 |
ttcatcccttcaaagcttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagctcgaatgactctttc |
481 |
Q |
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||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| |||||| |
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| T |
6823160 |
ttcatcccttcaaagcttgtttttcctttctctttcggatcttcagaacattcttgactatctttttctcttcaaccaagaaagctcgaatgattctttc |
6823061 |
T |
|
| Q |
482 |
tcgaacagcaccaccagataaaacaccaccatatgca |
518 |
Q |
| |
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|| |||||| || ||| |||||| || || ||||||| |
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| T |
6823060 |
tctaacagcgcctccacataaaatactacaatatgca |
6823024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 298 - 466
Target Start/End: Complemental strand, 24245859 - 24245690
Alignment:
| Q |
298 |
aacaactctaatgaattttgtgcttgtactata-tcactcaaacctaaaactcctccaaaaagatatgtatctcctttcataaaattcatcccttcaaag |
396 |
Q |
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|||| ||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||| | |||||| ||| || ||| | | |||||||||| |
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| T |
24245859 |
aacagctctaataaattttgtgcttttactataatcactcaaacctaaaactcctccaaaaagatctttatctcgtttaatgaaacttaacccttcaaag |
24245760 |
T |
|
| Q |
397 |
cttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagc |
466 |
Q |
| |
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|||| |||||||||||||||||||||||||| || |||||||| |||||||||| ||||||||||||||| |
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| T |
24245759 |
cttgcttttcctttgtcttttggatcttcaagactttcttgacgatcttttgctcttcaaccaagaaagc |
24245690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 6823664 - 6823549
Alignment:
| Q |
19 |
tacatgccaaaacaaaacatatggagcttgacatattctttctcagagagattcatcagccaaaacctacttgtcaagcacatgccagctcttgactaag |
118 |
Q |
| |
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|||||| | |||| |||||||| |||| |||| ||||||| || ||||||| ||||||||| |||| || |||||||||||||||||||||||||| || |
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| T |
6823664 |
tacatgtcgaaaccaaacatatagagcctgacctattcttgcttagagagagtcatcagccgaaacataattgtcaagcacatgccagctcttgaccaac |
6823565 |
T |
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| Q |
119 |
tggtagatgttaggaa |
134 |
Q |
| |
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||||||| |||||||| |
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| T |
6823564 |
tggtagaagttaggaa |
6823549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 477 - 565
Target Start/End: Complemental strand, 24245067 - 24244979
Alignment:
| Q |
477 |
ctttctcgaacagcaccaccagataaaacaccaccatatgcaaattttacaatccttctgcttctaggtaactttgatctcttgtactc |
565 |
Q |
| |
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||||||| ||||||||| ||||||||||| |||||||| ||| || ||| |||| ||| ||||||||||| | |||||||||||||| |
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| T |
24245067 |
ctttctctaacagcacctccagataaaactccaccataggcacgattcacagtcctcctgtttctaggtaacctagatctcttgtactc |
24244979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 466
Target Start/End: Original strand, 2418844 - 2418914
Alignment:
| Q |
396 |
gcttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagc |
466 |
Q |
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||||| ||||| ||||| || |||||||||||||| ||||| ||||| ||||||| |||||| | |||||| |
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| T |
2418844 |
gcttgcttttcttttgttttctggatcttcaaaactttcttaactattttttgctcttcaacaaggaaagc |
2418914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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