View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16515_low_98 (Length: 207)

Name: NF16515_low_98
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16515_low_98
NF16515_low_98
[»] chr4 (5 HSPs)
chr4 (19-188)||(10721291-10721460)
chr4 (19-188)||(10935060-10935229)
chr4 (64-187)||(9068230-9068356)
chr4 (22-78)||(9068369-9068425)
chr4 (22-82)||(11426814-11426874)
[»] chr3 (1 HSPs)
chr3 (20-148)||(18476238-18476366)
[»] scaffold0008 (1 HSPs)
scaffold0008 (65-188)||(39582-39708)
[»] chr7 (3 HSPs)
chr7 (64-125)||(24815170-24815231)
chr7 (22-82)||(24815243-24815303)
chr7 (29-90)||(15707782-15707843)
[»] chr8 (2 HSPs)
chr8 (64-125)||(23867292-23867356)
chr8 (22-75)||(23867219-23867272)
[»] chr2 (2 HSPs)
chr2 (22-125)||(24312652-24312750)
chr2 (65-125)||(20475626-20475686)
[»] chr5 (1 HSPs)
chr5 (31-82)||(19004903-19004954)


Alignment Details
Target: chr4 (Bit Score: 138; Significance: 2e-72; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 10721460 - 10721291
Alignment:
Q  19 ctaacatcctattgtgagaatttatttttctctgaaattggttgcttgtgggagtttatttctccctgggtttctctgtgaggctgggttctatctctat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||    
T  10721460 ctaacatcctattgtgagaatttatttttctctgaaattggttgcttgtgggagtttatttctccctgggtttctctgtgaggttgtgctctatctctat 10721361  T
Q  119 tccgctgtatatgcctctgatgatcttggaaatgcttcaacatgtccaactatgcattaatattattttt 188  Q
    |||||||||||||||||||||| ||||||||||| | |||||||||||| ||||||||| ||||||||||    
T  10721360 tccgctgtatatgcctctgatgttcttggaaatgttccaacatgtccaattatgcattactattattttt 10721291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 10935229 - 10935060
Alignment:
Q  19 ctaacatcctattgtgagaatttatttttctctgaaattggttgcttgtgggagtttatttctccctgggtttctctgtgaggctgggttctatctctat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||    
T  10935229 ctaacatcctattgtgagaatttatttttctctgaaattggttgcttgtgggagtttatttctccctgggtttctctgtgaggttgtgctctatctctat 10935130  T
Q  119 tccgctgtatatgcctctgatgatcttggaaatgcttcaacatgtccaactatgcattaatattattttt 188  Q
    |||||||||||||||||||||| ||||||||||| | |||||||||||| ||||||||| ||||||||||    
T  10935129 tccgctgtatatgcctctgatgttcttggaaatgttccaacatgtccaattatgcattactattattttt 10935060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 64 - 187
Target Start/End: Complemental strand, 9068356 - 9068230
Alignment:
Q  64 ttgtgggagtttatttctccctgggtttctctgtgaggctgggttctatctctattccgc---tgtatatgcctctgatgatcttggaaatgcttcaaca 160  Q
    |||||||||||||||||||||| || |||||||||||||| |||| |||||||||  |||   ||| ||||||||||||| ||||||| ||| | |||||    
T  9068356 ttgtgggagtttatttctcccttggattctctgtgaggctaggttttatctctatgtcgctgttgtgtatgcctctgatgttcttggagatgttccaaca 9068257  T
Q  161 tgtccaactatgcattaatattatttt 187  Q
    ||||||| ||||||||| |||| ||||    
T  9068256 tgtccaaatatgcattactattttttt 9068230  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 9068425 - 9068369
Alignment:
Q  22 acatcctattgtgagaatttatttttctctgaaattggttgcttgtgggagtttatt 78  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  9068425 acatcctattgtgagaatttatttttctctgaagttggttgcttgtgagagtttatt 9068369  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 11426814 - 11426874
Alignment:
Q  22 acatcctattgtgagaatttatttttctctgaaattggttgcttgtgggagtttatttctc 82  Q
    ||||||| |||| |||||||||||||||||||| |||||||||| || |||||||||||||    
T  11426814 acatcctgttgtaagaatttatttttctctgaagttggttgcttatgagagtttatttctc 11426874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 18476366 - 18476238
Alignment:
Q  20 taacatcctattgtgagaatttatttttctctgaaattggttgcttgtgggagtttatttctccctgggtttctctgtgaggctgggttctatctctatt 119  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||    
T  18476366 taacattctattgtgagaatttatttttctctgaaattggttgcttgtgggaatttatttctccctggatttctctatgaggctgggttctatctctatt 18476267  T
Q  120 ccgctgtatatgcctctgatgatcttgga 148  Q
    |||||||||||| ||||||||||||||||    
T  18476266 ccgctgtatatggctctgatgatcttgga 18476238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 65 - 188
Target Start/End: Complemental strand, 39708 - 39582
Alignment:
Q  65 tgtgggagtttatttctccctgggtttctctgtgaggctgggttctatctctattccgctg---tatatgcctctgatgatcttggaaatgcttcaacat 161  Q
    ||||||||||||||||||||| ||||| ||| |||||||||||||||||| ||||| ||||   | ||| ||||||||| ||||||| ||| ||||||||    
T  39708 tgtgggagtttatttctcccttggtttttctatgaggctgggttctatctttattctgctgctatgtattcctctgatgttcttggacatgtttcaacat 39609  T
Q  162 gtccaactatgcattaatattattttt 188  Q
    |||||| ||||||||| ||||||||||    
T  39608 gtccaaatatgcattactattattttt 39582  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 24815231 - 24815170
Alignment:
Q  64 ttgtgggagtttatttctccctgggtttctctgtgaggctgggttctatctctattccgctg 125  Q
    |||||||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||    
T  24815231 ttgtgggagtttatttctccctgaatttttctatgaggctgggttctatctctattccgctg 24815170  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 24815303 - 24815243
Alignment:
Q  22 acatcctattgtgagaatttatttttctctgaaattggttgcttgtgggagtttatttctc 82  Q
    ||||||| ||||||||||||||||| ||||||| |||||| |||||| |||||||||||||    
T  24815303 acatcctcttgtgagaatttattttactctgaagttggtttcttgtgagagtttatttctc 24815243  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 15707843 - 15707782
Alignment:
Q  29 attgtgagaatttatttttctctgaaattggttgcttgtgggagtttatttctccctgggtt 90  Q
    |||||||||||||||||||||||||||  ||||   |||||||||| || ||||||| ||||    
T  15707843 attgtgagaatttatttttctctgaaaaaggttttatgtgggagttaatgtctccctaggtt 15707782  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 23867292 - 23867356
Alignment:
Q  64 ttgtgggagtttatttctccct---gggtttctctgtgaggctgggttctatctctattccgctg 125  Q
    |||||||||||||||||| |||   |||||| |||||||||||||||||||||||||||| ||||    
T  23867292 ttgtgggagtttatttctgcctcctgggtttttctgtgaggctgggttctatctctattctgctg 23867356  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 23867219 - 23867272
Alignment:
Q  22 acatcctattgtgagaatttatttttctctgaaattggttgcttgtgggagttt 75  Q
    |||||||||| || |||||||||||||||||   ||||||||||||| ||||||    
T  23867219 acatcctattctgtgaatttatttttctctgttgttggttgcttgtgagagttt 23867272  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 24312652 - 24312750
Alignment:
Q  22 acatcctattgtgagaatttatttttctctgaaattggttgcttgtgggagtttatttctccctgggtttctctgtgaggctgggttctatctctattcc 121  Q
    |||||||||||||||||||||||| ||||||   ||   |  |||||||||||||||||||||| ||||||| ||| |||||||||  | ||||||||||    
T  24312652 acatcctattgtgagaatttatttctctctg---ttttatttttgtgggagtttatttctcccttggtttctttgtaaggctgggt--tttctctattcc 24312746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 20475626 - 20475686
Alignment:
Q  65 tgtgggagtttatttctccctgggtttctctgtgaggctgggttctatctctattccgctg 125  Q
    |||||||||||| |||||| ||||||| | |||||||||||||| |||||||||| |||||    
T  20475626 tgtgggagtttagttctccttgggtttttatgtgaggctgggttatatctctatttcgctg 20475686  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 19004903 - 19004954
Alignment:
Q  31 tgtgagaatttatttttctctgaaattggttgcttgtgggagtttatttctc 82  Q
    ||||||||||||||||||||  || ||||||||||||| |||||||||||||    
T  19004903 tgtgagaatttatttttctcgaaagttggttgcttgtgagagtttatttctc 19004954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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