View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16516_high_10 (Length: 376)

Name: NF16516_high_10
Description: NF16516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16516_high_10
NF16516_high_10
[»] chr4 (4 HSPs)
chr4 (209-308)||(26594085-26594184)
chr4 (72-155)||(26593976-26594059)
chr4 (238-308)||(47952119-47952189)
chr4 (72-154)||(47951954-47952036)
[»] chr8 (2 HSPs)
chr8 (1-71)||(4155427-4155497)
chr8 (1-66)||(4126040-4126105)
[»] chr7 (1 HSPs)
chr7 (94-149)||(49101323-49101379)
[»] chr2 (1 HSPs)
chr2 (75-146)||(17072210-17072282)


Alignment Details
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 209 - 308
Target Start/End: Original strand, 26594085 - 26594184
Alignment:
Q  209 ccaccgtcactaacctccaatgccgccatcaccatcgccggtcaccgccatcaccaatgtcacctgcgttcgtccttcgccaccaccggtgttttggttg 308  Q
    ||||| |||||||||||||  ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  26594085 ccaccatcactaacctccatcgccgccatcaccatcgccggtcaccgccatctccaacgtcacctgcgttcgtccttcgccaccaccggtgttttggttg 26594184  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 72 - 155
Target Start/End: Original strand, 26593976 - 26594059
Alignment:
Q  72 gagaaatgattcataaacatccttttccataccactcttatacacaccctagtggcagggtaatttggtaatttcacaagtcca 155  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26593976 gagaaatgattcataaacacccttttccataccacttttatacacaccctagtggcagggtaatttggtaatttcacaagtcca 26594059  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 308
Target Start/End: Original strand, 47952119 - 47952189
Alignment:
Q  238 caccatcgccggtcaccgccatcaccaatgtcacctgcgttcgtccttcgccaccaccggtgttttggttg 308  Q
    ||||||||| ||||||||| |||||| | |||||||||||||||||||| | |||| ||||||||||||||    
T  47952119 caccatcgctggtcaccgcaatcaccgacgtcacctgcgttcgtccttctctaccatcggtgttttggttg 47952189  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 154
Target Start/End: Original strand, 47951954 - 47952036
Alignment:
Q  72 gagaaatgattcataaacatccttttccataccactcttatacacaccctagtggcagggtaatttggtaatttcacaagtcc 154  Q
    |||||||||||| || ||| ||||||||||| |||| || || ||||||||   | |||||| ||||||||||||||||||||    
T  47951954 gagaaatgattcctatacacccttttccataacacttttttatacaccctatgcgtagggtattttggtaatttcacaagtcc 47952036  T

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Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 4155497 - 4155427
Alignment:
Q  1 atcaaagtcacaatcataacgtcggcatgataataatttactatattttgttgactttctattatttttat 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4155497 atcaaagtcacaatcataacgtcggcatgataataatttactatattttgttgactttctattatttttat 4155427  T

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Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 4126105 - 4126040
Alignment:
Q  1 atcaaagtcacaatcataacgtcggcatgataataatttactatattttgttgactttctattatt 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4126105 atcaaagtcacaatcataacgtcggcatgataataatttactatattttgttgactttctattatt 4126040  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 49101379 - 49101323
Alignment:
Q  94 ttttccataccactcttatacacacccta-gtggcagggtaatttggtaatttcaca 149  Q
    ||||||||||||||| |||||||| |||| |||| |||||| |||||||||||||||    
T  49101379 ttttccataccactcatatacacatcctatgtggtagggtattttggtaatttcaca 49101323  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 17072210 - 17072282
Alignment:
Q  75 aaatgattcataaacatccttttccataccactcttatacacacccta-gtggcagggtaatttggtaatttc 146  Q
    |||||||||||| ||||||||| ||||||||||||| || || ||| |  ||||||||||  |||||||||||    
T  17072210 aaatgattcatagacatcctttcccataccactcttgtataccccccatatggcagggtatattggtaatttc 17072282  T

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