View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16516_high_14 (Length: 319)
Name: NF16516_high_14
Description: NF16516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16516_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 301
Target Start/End: Original strand, 45224673 - 45224952
Alignment:
| Q |
18 |
ctatatcaattattttgaacagggtagaagaaaaaatatccacaaagccaattgctgattttattactctttgctcaactatatatatagttacgttgca |
117 |
Q |
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| T |
45224673 |
ctatatcaattattttgaacagggtagaagaaaaaatatccacaaagccaattgctgattttattactctttgctcaactatatatatagttacgttgca |
45224772 |
T |
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| Q |
118 |
gaagcatgaaagaaataatatattcaaatcagcattatattcattctttaatgagaacgtgtctccactcttcaaaccaacatgttctttacctgattca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45224773 |
gaagcatgaaagaaataatatattcaaatcagcattatattcattctttaatcagaacatgtctccactcttcaaaccaacatgttctttacctgattca |
45224872 |
T |
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| Q |
218 |
ttggttaattagggttttgtgactgaaactaaatgagactcccaattggcatggtactgttgtattgtatgacttgctcaggtc |
301 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45224873 |
ttgg----ttagggttttgtgactgaaactaaatgagactcccaattggcatgttactgttgtattgtatgacttgctcaggtc |
45224952 |
T |
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