View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16516_high_16 (Length: 310)
Name: NF16516_high_16
Description: NF16516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16516_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 10243798 - 10243492
Alignment:
| Q |
1 |
tcttcataatacttttatatgcaattaaagaccatcacaagtttgaaactacaaaagtatgtgtaaattattgtatatatattttaaaagtttccattca |
100 |
Q |
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| T |
10243798 |
tcttcataatacttttatattcaattaaagactatcacaagtttgaaactacaaaagtatgtgtaaattattgtatatatattttaaaagtttccattca |
10243699 |
T |
|
| Q |
101 |
acatatttaacatgtgtatgtacaacctacttagtt----catgattgaaaaggtagaaatgccacaaagcaattcttaatttttcaagtagtgattcat |
196 |
Q |
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| T |
10243698 |
acatatttaacatgtgtatgtacaacctacttagttagttcatgattgaaaaggtagaactgccacaaagcaattcttaatttttcaagtagtgattcat |
10243599 |
T |
|
| Q |
197 |
gtggtagcacttcagtttccatatgatacacaaacttgtacaaatcattctgcacgcaattaacccataaacatgccattccaactatcaacatttcttt |
296 |
Q |
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| T |
10243598 |
gtggtagcacttcagtttccatatgatacacaaacttgtacaaatcattctgcatgtaattaacccataaacatgccattccaactatcaacatttcttt |
10243499 |
T |
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| Q |
297 |
catttca |
303 |
Q |
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||||||| |
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| T |
10243498 |
catttca |
10243492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 10225056 - 10224858
Alignment:
| Q |
1 |
tcttcataatacttttatatgcaattaaagaccatcacaagtttgaaactacaaaagtatgtgtaaattattgtatatatattttaaaagtttccattca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||| |||||| |||||||| ||||||||| |
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| T |
10225056 |
tcttcataatacttttatatgcaattaaagactatcacaagtttgaaactgcaaagttatgtgtaaatttcagtatat----tttaaaagcttccattca |
10224961 |
T |
|
| Q |
101 |
acatatttaacatgtgtatgtacaacctactt----agttcatgattgaaaaggtagaaatgccacaaagcaattcttaatttttcaagtagtgattcat |
196 |
Q |
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| T |
10224960 |
gcatctttaacatgtgtatgtacaacctacttagttagttcatgcttgaaaagttagaactgccac-aagcaattcttagtttttcaagcagtggttcat |
10224862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 35 - 297
Target Start/End: Complemental strand, 10233281 - 10233019
Alignment:
| Q |
35 |
tcacaagtttgaaactacaaaagtatgtgtaaattattgtatatatattttaaaagtttccattcaacatatttaacatgtgtatgtacaacctac---- |
130 |
Q |
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|||||| | ||||||||||||||||||||||| || || | ||||||||||||| ||||||| | || |||||||||||||| | |||||||| |
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| T |
10233281 |
tcacaactctgaaactacaaaagtatgtgtaatttttttt---tatattttaaaagcttccattaagtatctttaacatgtgtattttcaacctacgtac |
10233185 |
T |
|
| Q |
131 |
----ttagttcatgattgaaaaggtagaaatgccacaaagcaattcttaatttttcaagtagtgattcatgtggtagcacttcagtttccatatgataca |
226 |
Q |
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|||||||||| |||||||||||||| | |||||| ||||||||||||||||||||||||||||||||| |||||||| ||| | ||||||||||| |
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| T |
10233184 |
ttagttagttcatggttgaaaaggtagaactaccacaa-gcaattcttaatttttcaagtagtgattcatgt-gtagcactccagctgccatatgatact |
10233087 |
T |
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| Q |
227 |
caaacttgtacaaatcattctgcacgcaattaacccataaacatgccattccaactatc-aacatttctttc |
297 |
Q |
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|||||||||||||| ||||||||| | ||||||||| ||||| | ||||||||||| |||||||||||| |
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| T |
10233086 |
caaacttgtacaaaccattctgcatg----taacccatagacatggctttccaactatcaaacatttctttc |
10233019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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