View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16516_high_22 (Length: 226)
Name: NF16516_high_22
Description: NF16516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16516_high_22 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 86 - 226
Target Start/End: Original strand, 45181700 - 45181840
Alignment:
| Q |
86 |
gtaaaagtaggtaaattaagtaagcatacgttgatagaggtaattactgattataatttgtaggttccatctgaaaatcttaaaaggcaaaacataattg |
185 |
Q |
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| T |
45181700 |
gtaaaagtaggtaaatcaagtaagcatacgttgatagaggtaattactgattataatttgtacgttccatctgaaaatcttaaaaggcaaaacataattg |
45181799 |
T |
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| Q |
186 |
tttaatgaaacagatcaacatggttgtgtattactattaga |
226 |
Q |
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| T |
45181800 |
tttaatgaaacagatcaacatggttgtgtattactattaga |
45181840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 8 - 195
Target Start/End: Original strand, 45174745 - 45174927
Alignment:
| Q |
8 |
aaaacttacttttgtgaaaaaagaaccacatagttcaggtgcacggtaccacctagttgcaatataatatagtcctttgtaaaagtaggtaaattaagta |
107 |
Q |
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| T |
45174745 |
aaaacttacttttgagaaaaaagaaccacatagttcaggtgcacggtaccacctagttgc-----aacatagtccttggtaaaagtaggtaaattaagtc |
45174839 |
T |
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| Q |
108 |
agcatac-gttgatagaggtaattactgattataatttgtaggttccatctgaaaatctt-aaaaggcaaaacataattgtttaatgaaa |
195 |
Q |
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| T |
45174840 |
agcaagcggtttagagaggtagcta--gattgcaatttgtaggttccaactgaaaatcttaaaaaggaaaaacataattgattgatgaaa |
45174927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 45181648 - 45181702
Alignment:
| Q |
1 |
caaacaaaaaacttacttttgtgaaaaaagaaccacatagttcaggtgcacggta |
55 |
Q |
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| T |
45181648 |
caaacaaaaaacttacttttgtgaaaaaagaaccacatagttcaggtgcacggta |
45181702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 29961966 - 29962023
Alignment:
| Q |
12 |
cttacttttgtgaaaaaagaaccacatagttcaggtgcacggtaccacctagttgcaa |
69 |
Q |
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| T |
29961966 |
cttacttttgagaaaaaagaaccacatagttcaggtgcacgataccaccgagtcgcaa |
29962023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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