View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16516_high_23 (Length: 222)
Name: NF16516_high_23
Description: NF16516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16516_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 4083142 - 4083353
Alignment:
| Q |
1 |
aaacgctacaatattcatgtcacaagaacaacctcatacctcggagacaacaaagttagaaaatacatcaatcgaaggaaataacaatgaaacgtcgatg |
100 |
Q |
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| T |
4083142 |
aaacgctacaatattcatgtcacaagaacaacctcatacctcggagacaacaaagttagaaaatacaccaaacgaaggaaataacaatgaaacgtcga-- |
4083239 |
T |
|
| Q |
101 |
acgaaagagttacctcttccaccatcattgcaacaacccaacaacgccaacaaagcttccgaatttgtgaaacggacaacttctgaacgtaggctatcgt |
200 |
Q |
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|||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||| |||||||||||| |||||||||| |||||||||||||||| |
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| T |
4083240 |
-cgaaagagttacctctcccaccatcaatgcaacaacccaacaacaccaacaaagcttcagaatttgtgaaaaggacaacttccgaacgtaggctatcgt |
4083338 |
T |
|
| Q |
201 |
ttaaattgagtataa |
215 |
Q |
| |
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||||||||||||||| |
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| T |
4083339 |
ttaaattgagtataa |
4083353 |
T |
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