View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16516_high_3 (Length: 522)

Name: NF16516_high_3
Description: NF16516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16516_high_3
NF16516_high_3
[»] chr1 (19 HSPs)
chr1 (12-505)||(3361745-3362238)
chr1 (243-443)||(3340600-3340800)
chr1 (100-403)||(2006580-2006883)
chr1 (308-471)||(2948271-2948434)
chr1 (243-388)||(3218258-3218403)
chr1 (262-470)||(9818667-9818875)
chr1 (290-420)||(3378846-3378976)
chr1 (288-462)||(6601560-6601734)
chr1 (302-450)||(3372772-3372920)
chr1 (288-471)||(4334790-4334973)
chr1 (219-399)||(4322831-4323011)
chr1 (260-471)||(3349446-3349657)
chr1 (260-403)||(2019876-2020019)
chr1 (243-340)||(3340853-3340950)
chr1 (288-413)||(6592305-6592430)
chr1 (243-336)||(3341007-3341100)
chr1 (260-403)||(2010663-2010806)
chr1 (109-403)||(2012073-2012367)
chr1 (101-201)||(3379072-3379172)
[»] chr4 (1 HSPs)
chr4 (158-403)||(21237664-21237909)
[»] chr2 (5 HSPs)
chr2 (243-471)||(20923538-20923766)
chr2 (240-471)||(20953053-20953284)
chr2 (288-470)||(20927132-20927314)
chr2 (243-444)||(20934542-20934743)
chr2 (287-404)||(39274180-39274297)
[»] chr5 (1 HSPs)
chr5 (349-471)||(17969922-17970044)


Alignment Details
Target: chr1 (Bit Score: 466; Significance: 0; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 12 - 505
Target Start/End: Complemental strand, 3362238 - 3361745
Alignment:
Q  12 agatgaacgaaaaatcgaagcaaattgctagagcatccacacaatttaactagatagcatccatagtctaaacacatcgttaactcaactaatcggaaag 111  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  3362238 agatgaacgaaaaatcgaagcaaattgctagagcatccacgcaatttaactagattgcatccatagtctaaatacatcgttaactcaactaatcggaaag 3362139  T
Q  112 tgttttcaaagctaatatcctcaaattcaccactgatatgagcaaccttcagatttggtccgtggatattaatttggctgaaaccgtcaaggttaaacaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3362138 tgttttcaaagctaatatcctcaaattcaccactgatatgagcaaccttcagatttggtccgtggatattaatttggctgaaaccatcaaggttaaacaa 3362039  T
Q  212 catcaagttttcaagaaaagggctgttggagatcatgttttcaaacgaatcttgagtcattgtaacgtgactcaattcaagacttttcaagttcttgaag 311  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3362038 catcaatttttcaagaaaagggctgttggagatcatgttttcaaaagaatcttgagtcattgtaacgtgactcaattcaagacttttcaagttcttgaag 3361939  T
Q  312 ccttcaaacgttgttggaggtttaagccaacagcattttaattctaaatgatgtaaactttgacaagagaataagcaccaagggatcttatagcgttcgt 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3361938 ccttcaaacgttgttggaggtttaagccaacagcattttaattctaaatgatgtaaactttgacaagagaataagcaccaagggatcttatagcgttcgt 3361839  T
Q  412 ctaaccaaatgtgcagcacaaactctttaataggccttcgggttaggtgaataatccacctttgaatatctgttatagaactcaaactaatgag 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3361838 ctaaccaaatgtgcagcacaaactctttaataggccttcgggttaggtgaataatccacctttgaatatctgtcatagaactcaaactaatgag 3361745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 243 - 443
Target Start/End: Complemental strand, 3340800 - 3340600
Alignment:
Q  243 atcatgttttcaaacgaatcttgagtcattgtaacgtgactcaattcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaac 342  Q
    |||||||||||||| | |||||||||||||||||| | |  |||   |||||||||||| |||  ||||||||||||||| |||||||| ||||| ||||    
T  3340800 atcatgttttcaaaagcatcttgagtcattgtaacttcaaacaaagaaagacttttcaaattccggaagccttcaaacgtcgttggaggattaaggcaac 3340701  T
Q  343 agcattttaattctaaatgatgtaaactttgacaagagaataagcaccaagggatcttatagcgttcgtctaaccaaatgtgcagcacaaactctttaat 442  Q
    |  | || | ||||||||| || ||||||||||||||||||||||| ||||| || |||||||||   | ||||| ||||| ||||||||||||||||||    
T  3340700 aataattcagttctaaatgttgcaaactttgacaagagaataagcagcaaggtattttatagcgtggttttaacctaatgtccagcacaaactctttaat 3340601  T
Q  443 a 443  Q
    |    
T  3340600 a 3340600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 100 - 403
Target Start/End: Complemental strand, 2006883 - 2006580
Alignment:
Q  100 ctaatcggaaagtgttttcaaagctaatatcctcaaattcaccactgatatgagcaaccttcagatttggtccgtggatattaatttggctgaaaccgtc 199  Q
    ||||| |||||||||| |||||||||||||||||||||| ||||| |||||    |||||| ||||||||| |||| || || |||||| ||||||| ||    
T  2006883 ctaattggaaagtgttgtcaaagctaatatcctcaaatttaccacagatatccaaaaccttaagatttggtgcgtgaatgtttatttgggtgaaaccatc 2006784  T
Q  200 aaggttaaacaacatcaagttttcaagaaaagggctgttggagatcatgttttcaaacgaatcttgagtcattgtaacgtgactcaattcaagacttttc 299  Q
    ||| |    |||  |||| |||||||| | |||||   | || ||||  || ||||| | ||  |||| |||  |||| |||  ||| |||||||||||     
T  2006783 aagttctgtcaatgtcaaattttcaagcagagggcaactagatatcaaattctcaaaagcatactgagacatgctaacatgatccaaatcaagacttttt 2006684  T
Q  300 aagttcttgaagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaatgatgtaaactttgacaagagaataagcaccaagggatct 399  Q
    |||||||| |||||||||| ||| | ||||||||||||| ||||  | | ||||  || ||||||||||||||||||||| |||||||||||||| ||||    
T  2006683 aagttcttcaagccttcaatcgtcgatggaggtttaagcaaacaataatataatgttagatgatgtaaactttgacaagaaaataagcaccaaggtatct 2006584  T
Q  400 tata 403  Q
    ||||    
T  2006583 tata 2006580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 308 - 471
Target Start/End: Original strand, 2948271 - 2948434
Alignment:
Q  308 gaagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaatgatgtaaactttgacaagagaataagcaccaagggatcttatagcgt 407  Q
    ||||||||||||| ||||||||||||||||||||||  | || |  |||||||||||||||| ||| || ||||||||| |  |||| ||||||||||||    
T  2948271 gaagccttcaaactttgttggaggtttaagccaacaataattcagatctaaatgatgtaaaccttggcaggagaataaggatgaaggtatcttatagcgt 2948370  T
Q  408 tcgtctaaccaaatgtgcagcacaaactctttaataggccttcgggttaggtgaataatccacc 471  Q
    |  || || ||||||| || |||||||||||||||| |||||| |||||| |||  ||||||||    
T  2948371 tgatcaaaacaaatgtccaacacaaactctttaatatgccttccggttagatgacgaatccacc 2948434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 243 - 388
Target Start/End: Original strand, 3218258 - 3218403
Alignment:
Q  243 atcatgttttcaaacgaatcttgagtcattgtaacgtgactcaattcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaac 342  Q
    |||| ||||||||| | |||||||| ||||||||| |||   | ||||||||||||||||||||||||||||| ||||||||||||||||| ||  ||||    
T  3218258 atcaagttttcaaaagcatcttgagccattgtaacctgatatagttcaagacttttcaagttcttgaagcctttaaacgttgttggaggttgaatacaac 3218357  T
Q  343 agcattttaattctaaatgatgtaaactttgacaagagaataagca 388  Q
    | || | ||||| |||||  |||||||||||||| ||||| |||||    
T  3218358 aacagtctaattttaaattctgtaaactttgacatgagaacaagca 3218403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 262 - 470
Target Start/End: Original strand, 9818667 - 9818875
Alignment:
Q  262 cttgagtcattgtaacgtgactcaattcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaatg 361  Q
    ||||||||||||||||  || |||| | ||||||||||   |||   |||||||||||| ||||||||||||||||||||||  | || |  ||||||||    
T  9818667 cttgagtcattgtaacccgattcaaataaagacttttctgattccgaaagccttcaaacattgttggaggtttaagccaacaataattaagatctaaatg 9818766  T
Q  362 atgtaaactttgacaagagaataagcaccaagggatcttatagcgttcgtctaaccaaatgtgcagcacaaactctttaataggccttcgggttaggtga 461  Q
    |||||||| ||| || ||||||||| |  |||| |||||||||||||  || || ||||||| || ||||||||||||||||  | ||| |||||| |||    
T  9818767 atgtaaaccttggcaggagaataaggatgaaggtatcttatagcgttgatcaaaacaaatgtccaacacaaactctttaatatactttccggttagatga 9818866  T
Q  462 ataatccac 470  Q
    | |||||||    
T  9818867 acaatccac 9818875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 290 - 420
Target Start/End: Complemental strand, 3378976 - 3378846
Alignment:
Q  290 aagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaatgatgtaaactttgacaagagaataagcac 389  Q
    |||||||||||| |||||||||||||||||  |||||||||||||||| | ||| || | |||   ||||||| ||||||||||||||||||||||||||    
T  3378976 aagacttttcaaattcttgaagccttcaaatattgttggaggtttaagtcgacaacaatataagcttaaatgacgtaaactttgacaagagaataagcac 3378877  T
Q  390 caagggatcttatagcgttcgtctaaccaaa 420  Q
    || |  |||||||| | ||| |||| |||||    
T  3378876 catgttatcttataacattcctctatccaaa 3378846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 288 - 462
Target Start/End: Original strand, 6601560 - 6601734
Alignment:
Q  288 tcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaatgatgtaaactttgacaagagaataagc 387  Q
    |||||||| ||||||||| |||| |||| ||| |||| ||| ||| |||||||||||     |||||||||||||||||||| ||||||||| |||||||    
T  6601560 tcaagactcttcaagttcctgaatccttgaaatgttgatggtggtataagccaacagttaaataattctaaatgatgtaaaccttgacaagaaaataagc 6601659  T
Q  388 accaagggatcttatagcgttcgtctaaccaaatgtgcagcacaaactctttaataggccttcgggttaggtgaa 462  Q
    |  |||| || ||||||||||   ||  ||| || | ||||||||||||||||| |||||||| |||||| ||||    
T  6601660 atgaaggtattttatagcgttgccctttccagatttccagcacaaactctttaacaggccttctggttagatgaa 6601734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 302 - 450
Target Start/End: Complemental strand, 3372920 - 3372772
Alignment:
Q  302 gttcttgaagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaatgatgtaaactttgacaagagaataagcaccaagggatctta 401  Q
    ||||||||| |||||||||||||||||| |||||||   ||| ||   |||   ||||||| |||||||||||||||||||||| | | |||| ||||||    
T  3372920 gttcttgaaaccttcaaacgttgttggaagtttaagttgacaacaagataagcttaaatgacgtaaactttgacaagagaataaactcaaaggtatctta 3372821  T
Q  402 tagcgttcgtctaaccaaatgtgcagcacaaactctttaataggccttc 450  Q
    || |||| ||||||||||| |||||||| || |||||| |||| |||||    
T  3372820 taacgtttgtctaaccaaaagtgcagcagaagctcttttatagaccttc 3372772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 288 - 471
Target Start/End: Original strand, 4334790 - 4334973
Alignment:
Q  288 tcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaatgatgtaaactttgacaagagaataagc 387  Q
    |||||||||||||||||  | |||||||||||| | ||||||||||||||| |||| |  ||||||| ||||  ||||||||||||||| |||||||| |    
T  4334790 tcaagacttttcaagtttctaaagccttcaaacatcgttggaggtttaagcaaacacccatttaattttaaagaatgtaaactttgacatgagaataaac 4334889  T
Q  388 accaagggatcttatagcgttcgtctaaccaaatgtgcagcacaaactctttaataggccttcgggttaggtgaataatccacc 471  Q
    ||||||| | ||| |||   || |||| |||||  | || ||||| ||||||||||| |||||   |||| |||| ||||||||    
T  4334890 accaaggtaacttgtagtaatcatctatccaaacttccaacacaagctctttaatagaccttccaattagatgaagaatccacc 4334973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 219 - 399
Target Start/End: Original strand, 4322831 - 4323011
Alignment:
Q  219 ttttcaagaaaagggctgttggagatcatgttttcaaacgaatcttgagtcattgtaacgtgactcaattcaagacttttcaagttcttgaagccttcaa 318  Q
    |||||||| || ||||  ||||| |||||||||||||| | |||||||  || ||||||  || | |  |||||||||||||||||  |||||| |||||    
T  4322831 ttttcaagcaaggggcatttggatatcatgttttcaaaagcatcttgatccactgtaaccagatttagatcaagacttttcaagtttctgaagctttcaa 4322930  T
Q  319 acgttgttggaggtttaagccaacagcattttaattctaaatgatgtaaactttgacaagagaataagcaccaagggatct 399  Q
    ||    | ||||||||||||||||| ||| |||||| ||| |  |||||||||||||| |||||||| |||||||| ||||    
T  4322931 acaccatcggaggtttaagccaacaccatcttaattttaagttgtgtaaactttgacatgagaataaacaccaaggtatct 4323011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 260 - 471
Target Start/End: Complemental strand, 3349657 - 3349446
Alignment:
Q  260 atcttgagtcattgtaacgtgactcaattcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaa 359  Q
    ||||||||||||||||||  || |||| | |||||||||||  |||  ||||||||||||  ||||||||||||||||||| ||  | || |  | ||||    
T  3349657 atcttgagtcattgtaacccgattcaaataaagacttttcagattccggaagccttcaaaaattgttggaggtttaagccagcaataattcagatttaaa 3349558  T
Q  360 tgatgtaaactttgacaagagaataagcaccaagggatcttatagcgttcgtctaaccaaatgtgcagcacaaactctttaataggccttcgggttaggt 459  Q
    || ||||||| ||| || ||||||||| |  |||| ||| | |||||||  || || | ||||| || |||||||||||||||| | |||| |||||| |    
T  3349557 tgttgtaaaccttggcaggagaataaggatgaaggtatcatttagcgttgatcaaaactaatgtccaacacaaactctttaatatgtcttccggttagat 3349458  T
Q  460 gaataatccacc 471  Q
    ||| ||||||||    
T  3349457 gaagaatccacc 3349446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 260 - 403
Target Start/End: Complemental strand, 2020019 - 2019876
Alignment:
Q  260 atcttgagtcattgtaacgtgactcaattcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaa 359  Q
    |||||||| ||| |||| ||||  ||| | |||||||||||||||||| |||||||||| ||| | ||||||||||||| ||||  |   |||   || |    
T  2020019 atcttgagacatagtaatgtgatccaacttaagacttttcaagttcttaaagccttcaatcgtcgatggaggtttaagcaaacaataagataaacttaga 2019920  T
Q  360 tgatgtaaactttgacaagagaataagcaccaagggatcttata 403  Q
    ||| |||| ||||||||||| |||||||||||||| ||||||||    
T  2019919 tgaagtaagctttgacaagaaaataagcaccaaggtatcttata 2019876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 340
Target Start/End: Complemental strand, 3340950 - 3340853
Alignment:
Q  243 atcatgttttcaaacgaatcttgagtcattgtaacgtgactcaattcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagcca 340  Q
    |||||||||||||| | ||||||||||||| |||| | |  |||   |||||||||||| |||  |||||||||||| ||||||||||||||||||||    
T  3340950 atcatgttttcaaaagcatcttgagtcattctaactttagacaaagaaagacttttcaaattccggaagccttcaaatgttgttggaggtttaagcca 3340853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 288 - 413
Target Start/End: Original strand, 6592305 - 6592430
Alignment:
Q  288 tcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaatgatgtaaactttgacaagagaataagc 387  Q
    |||||||| |||||||||||||| |||| ||| |||| ||| ||| ||||||| ||   |  ||||||||||||||| |||||||||||||| ||||| |    
T  6592305 tcaagactcttcaagttcttgaaaccttgaaatgttgatggtggtataagccagcattctaataattctaaatgatgcaaactttgacaagaaaataacc 6592404  T
Q  388 accaagggatcttatagcgttcgtct 413  Q
    |  |||| || |||||||||| ||||    
T  6592405 atgaaggtattttatagcgttggtct 6592430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 336
Target Start/End: Complemental strand, 3341100 - 3341007
Alignment:
Q  243 atcatgttttcaaacgaatcttgagtcattgtaacgtgactcaattcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaa 336  Q
    |||||||||||||| | ||||||||||||| |||||  |  |||   |||||||||||| |||  |||||||||||| ||||||||||||||||    
T  3341100 atcatgttttcaaatgcatcttgagtcattctaacgacagacaaagaaagacttttcaaattccggaagccttcaaatgttgttggaggtttaa 3341007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 260 - 403
Target Start/End: Complemental strand, 2010806 - 2010663
Alignment:
Q  260 atcttgagtcattgtaacgtgactcaattcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaa 359  Q
    |||||||| ||| |||| ||||  ||| |||||||||||||||||||| |||||| |||  || | ||||||||||||| |||   |   |||   || |    
T  2010806 atcttgagacatagtaaagtgatccaactcaagacttttcaagttcttaaagcctacaattgtcgatggaggtttaagcaaaccataagataaacttaga 2010707  T
Q  360 tgatgtaaactttgacaagagaataagcaccaagggatcttata 403  Q
    ||| |||| ||||||||||| |||||||||||||| ||||||||    
T  2010706 tgaagtaagctttgacaagaaaataagcaccaaggtatcttata 2010663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 403
Target Start/End: Complemental strand, 2012367 - 2012073
Alignment:
Q  109 aagtgttttcaaagctaatatcctcaaattcaccactgatatgagcaaccttcagatttggtccgtggatattaatttggctgaaaccgtcaaggttaaa 208  Q
    |||||||||||||||||||||||||||||| ||||   |||     | | || ||||||||| |||| || || |||||| ||||||||||||  |        
T  2012367 aagtgttttcaaagctaatatcctcaaatttaccaacaatacctagaccgttgagatttggtgcgtgaatgtttatttgggtgaaaccgtcaaattctgc 2012268  T
Q  209 caacatcaagttttcaagaaaagggctgttggagatcatgttttcaaacgaatcttgagtcattgtaacgtgactcaattcaagacttttcaagttcttg 308  Q
    ||||||||| |||||||| | |||||   | || ||||   | ||||| | ||||||||  || ||||| | |   || | ||||||||||||||||||     
T  2012267 caacatcaatttttcaagcagagggcaactagatatcaaactctcaaaagcatcttgagaaatagtaactttaactaaataaagacttttcaagttcttc 2012168  T
Q  309 aagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaatgatgtaaactttgacaagagaataagcaccaagggatcttata 403  Q
    |||||||||| | | | ||||||||||||| ||||  |   ||||  || || |||||| ||||||||||| |||||||||||||| ||||||||    
T  2012167 aagccttcaatcatcgatggaggtttaagcaaacaagaaaataatgttagataatgtaagctttgacaagaaaataagcaccaaggtatcttata 2012073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 101 - 201
Target Start/End: Complemental strand, 3379172 - 3379072
Alignment:
Q  101 taatcggaaagtgttttcaaagctaatatcctcaaattcaccactgatatgagcaaccttcagatttggtccgtggatattaatttggctgaaaccgtca 200  Q
    |||| ||||| ||||| ||||| ||||||||||||||| |||||  || | |  |||||||||||||||| ||||   |||||||||  ||||||| |||    
T  3379172 taattggaaattgtttccaaagttaatatcctcaaatttaccaccaattttaaaaaccttcagatttggtgcgtgagcattaatttgtgtgaaaccatca 3379073  T
Q  201 a 201  Q
    |    
T  3379072 a 3379072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 158 - 403
Target Start/End: Complemental strand, 21237909 - 21237664
Alignment:
Q  158 cttcagatttggtccgtggatattaatttggctgaaaccgtcaaggttaaacaacatcaagttttcaagaaaagggctgttggagatcatgttttcaaac 257  Q
    ||||||||| |||  |||||||||||||||| ||||||| | ||| ||||  ||   |||  ||||||| |||||||  ||| | |||| |||||| ||     
T  21237909 cttcagattgggtgtgtggatattaatttgggtgaaaccatgaagattaactaattccaatgtttcaagcaaagggcacttgaatatcaagttttcgaaa 21237810  T
Q  258 gaatcttgagtcattgtaacgtgactcaattcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaacagcattttaattcta 357  Q
    | |||||||||||||||||| |   ||||   |||||||| ||||||| ||||||||||||||||||||||||||||||||||||| | | |||||||||    
T  21237809 gcatcttgagtcattgtaacttcgatcaaagaaagactttccaagttcctgaagccttcaaacgttgttggaggtttaagccaacaacttgttaattcta 21237710  T
Q  358 aatgatgtaaactttgacaagagaataagcaccaagggatcttata 403  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  21237709 aatgatgtaaactttgacaagagaataagcaccaaggtatcttata 21237664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 243 - 471
Target Start/End: Complemental strand, 20923766 - 20923538
Alignment:
Q  243 atcatgttttcaaacgaatcttgagtcattgtaacgtgactcaattcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaac 342  Q
    |||| ||||||||| | ||||| || || |||||| ||   ||||| |||||||||||||||| |||||||||||||| | | ||||||||||||| ||     
T  20923766 atcaagttttcaaaagcatctttagccactgtaacttgttccaattgaagacttttcaagttcatgaagccttcaaacatcgctggaggtttaagcgaag 20923667  T
Q  343 agcattttaattctaaatgatgtaaactttgacaagagaataagcaccaagggatcttatagcgttcgtctaaccaaatgtgcagcacaaactctttaat 442  Q
    | ||    || | ||||||||||||||||||||||||||||||||||||||| || ||||||||||  || |||||||||| |||| |||  | ||||||    
T  20923666 aacaaaacaaatttaaatgatgtaaactttgacaagagaataagcaccaaggtatgttatagcgttgctcgaaccaaatgtccagctcaagatttttaat 20923567  T
Q  443 aggccttcgggttaggtgaataatccacc 471  Q
    || |||||  ||||| |||| ||||||||    
T  20923566 agaccttcttgttagatgaagaatccacc 20923538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 240 - 471
Target Start/End: Complemental strand, 20953284 - 20953053
Alignment:
Q  240 gagatcatgttttcaaacgaatcttgagtcattgtaacgtgactcaattcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagcc 339  Q
    ||||||| ||||||||| | |||||||| || ||| ||  || |||  |||||||| |||||  |||| |||||||||||||| |||||||||||||| |    
T  20953284 gagatcaagttttcaaaagcatcttgagccactgttactagattcagatcaagactcttcaacctcttaaagccttcaaacgtcgttggaggtttaagac 20953185  T
Q  340 aacagcattttaattctaaatgatgtaaactttgacaagagaataagcaccaagggatcttatagcgttcgtctaaccaaatgtgcagcacaaactcttt 439  Q
    |||| || | |||||  |||||||||||||||||||||||||||||||||||||| ||||| |||  | |  ||| |||||  | |||||||| ||||||    
T  20953184 aacaccaatgtaatttcaaatgatgtaaactttgacaagagaataagcaccaaggtatcttgtagtatcccgctatccaaaatttcagcacaagctcttt 20953085  T
Q  440 aataggccttcgggttaggtgaataatccacc 471  Q
    |||||  ||||  ||||| |||| ||||||||    
T  20953084 aatagagcttctagttagatgaagaatccacc 20953053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 288 - 470
Target Start/End: Complemental strand, 20927314 - 20927132
Alignment:
Q  288 tcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaatgatgtaaactttgacaagagaataagc 387  Q
    |||||||| |||||  |||| |||| ||||||||| |||||||||||||| ||||| || | ||||| ||||||||||||||||||||||||||||||||    
T  20927314 tcaagactcttcaaactcttaaagctttcaaacgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagc 20927215  T
Q  388 accaagggatcttatagcgttcgtctaaccaaatgtgcagcacaaactctttaataggccttcgggttaggtgaataatccac 470  Q
    ||||||| |||||  ||  | | |||| |||||  | |||||||| |||||||||||  ||||  ||||| |||| |||||||    
T  20927214 accaaggtatcttggagtatccctctatccaaacttccagcacaagctctttaatagagcttctagttagatgaagaatccac 20927132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 243 - 444
Target Start/End: Complemental strand, 20934743 - 20934542
Alignment:
Q  243 atcatgttttcaaacgaatcttgagtcattgtaacgtgactcaattcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaac 342  Q
    |||| ||||||||| | |||||||| || ||  || ||| |||  ||||||||||||||| || | ||||||| ||||   |||||||||||||| ||||    
T  20934743 atcaagttttcaaaagcatcttgagccactgctacatgattcagatcaagacttttcaagctcctaaagcctttaaacaacgttggaggtttaagacaac 20934644  T
Q  343 agcattttaattctaaatgatgtaaactttgacaagagaataagcaccaagggatcttatagcgttcgtctaaccaaatgtgcagcacaaactctttaat 442  Q
    || | | |||||  |||||||||||||||||||||||||||||||||||||| ||||| ||| |||| |||   ||||  | |||||||| |||||||||    
T  20934643 agaaatgtaatttcaaatgatgtaaactttgacaagagaataagcaccaaggtatcttgtagagttcctctgtacaaacatccagcacaagctctttaat 20934544  T
Q  443 ag 444  Q
    ||    
T  20934543 ag 20934542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 287 - 404
Target Start/End: Complemental strand, 39274297 - 39274180
Alignment:
Q  287 ttcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaatgatgtaaactttgacaagagaataag 386  Q
    |||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||| ||    || | |||| | || ||||||||||| |||||||||    
T  39274297 ttcaagtcttttcaagttcctgaagccttcaaatgttgttggaggtttaagccaacaacaagccaactttaaacgttgcaaactttgacaggagaataag 39274198  T
Q  387 caccaagggatcttatag 404  Q
    |||||||| |||||||||    
T  39274197 caccaaggtatcttatag 39274180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 349 - 471
Target Start/End: Complemental strand, 17970044 - 17969922
Alignment:
Q  349 ttaattctaaatgatgtaaactttgacaagagaataagcaccaagggatcttatagcgttcgtctaaccaaatgtgcagcacaaactctttaataggcct 448  Q
    |||||| ||||||||||||||||||| |||| |||||||||||||| ||||||||| ||||  ||  |||||||| || ||||| |||||||| ||  ||    
T  17970044 ttaattttaaatgatgtaaactttgataagaaaataagcaccaaggtatcttatagagttcccctgcccaaatgtccaacacaagctctttaacagatct 17969945  T
Q  449 tcgggttaggtgaataatccacc 471  Q
    ||  ||||| |||| ||||||||    
T  17969944 tccagttagatgaagaatccacc 17969922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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