View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16516_low_1 (Length: 883)

Name: NF16516_low_1
Description: NF16516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16516_low_1
NF16516_low_1
[»] chr2 (2 HSPs)
chr2 (341-799)||(18005861-18006322)
chr2 (22-327)||(18005496-18005801)


Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 341 - 799
Target Start/End: Original strand, 18005861 - 18006322
Alignment:
Q  341 attacagaatgcatccatctcttcaacattgtaataggaaaacaaaccatgcatgcttgactaattttgagttagc--aaannnnnnngcaatcctttca 438  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||        ||||||||||||    
T  18005861 attacagaatgcatccatctcctcaacattgtaataggaaaacaaaccatgcatgcttggctaattttgagttagcttaattcagtttgcaatcctttca 18005960  T
Q  439 aatttagttggctaaaatttttactccataacaatattcatattaatccattcaatttgcacatacattcttgtccttatagtgatttttcatcaaatta 538  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  18005961 aatttagttggctaaattttttactccataacaatattcatattaatccattcaaattgcacatgcattcttgtccttatagtgatttttcatcaaatta 18006060  T
Q  539 tttgttaaattatgaaatgtcacattaaaataatactatcctacaattctcaaaatcttacaaagggatcacaaaaaactaaggcaccaaccatataaaa 638  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18006061 tttgttaaattatgaaatgtcacattaaaataatactatcctacaattctcaaaatcttacaaagggatcacaaaaaactaaggcaccaaccatataaaa 18006160  T
Q  639 tggatcatcaaactcaaatctctaccttgaaacttgagttcaatattctgtttagatctttgaaaaaccaagtagcaaaaaattgaaactttaagtttat 738  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  18006161 tggatcatcaaactcaaatctctgccttgaaacttgagttcaatattctgtttagatctttgaaaaaccaagtagtaaaatattgaaactttaagtttat 18006260  T
Q  739 taatgacatc-aatcccccaaatttagattatttatgattatcctttcacttctcattgatc 799  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18006261 taatgacatcaaagcccccaaatttagattatttatgattatcctttcacttctcattgatc 18006322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 22 - 327
Target Start/End: Original strand, 18005496 - 18005801
Alignment:
Q  22 cagcatacttgagaaacagtgattggagagtcagcaagcaacatattcgatgtagaatcaatcgacaaaaaccaaacaataaaactttttaaacatgaaa 121  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18005496 cagcatacttgagaaacagtgataggagagtcagcaagcaacatattcgatgtagaatcaatcgacaaaaaccaaacaataaaactttttaaacatgaaa 18005595  T
Q  122 atcgtaacaatgagaattagcttagctgctctcatatcaaaagataatattctactttcttcactacaatttcttagaaaacataaattaggccatggag 221  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18005596 atcgtaacaatgagaattagcttagctgctctcatgtcaaaagataatattctactttcttcgctacaatttcttagaaaacataaattaggccatggag 18005695  T
Q  222 actaaaacaaccatgtagaacaatactcgattcgaacatacatagaatgaaacgttgtcaaaaatcatataacacaaatcaataagacaaaccccttaaa 321  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18005696 actaaaacaaccatgtagaacaatactcgtttcggacatacatagaatgaaacgttgtcaaaaatcatataacacaaatcaataagacaaaccccttaaa 18005795  T
Q  322 ctatag 327  Q
    ||||||    
T  18005796 ctatag 18005801  T

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