View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16516_low_10 (Length: 440)
Name: NF16516_low_10
Description: NF16516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16516_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 13 - 433
Target Start/End: Complemental strand, 2802587 - 2802170
Alignment:
| Q |
13 |
agaaattgatttaaactattatccgtgtcattcatttacacaattgagcatagaatacacatattgaacagttacaacaagaacaaattgataacaaatc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2802587 |
agaaattgatttaaactattatccgtgtcattcatttacacaattgagcatagaatacacatattgaacagttacaacaagaacaaattgataacaaatc |
2802488 |
T |
|
| Q |
113 |
attaaacatagttttagttttcagccaaataacttatagctaaattcattttcagtaaatcacaacctgaaaaagcttaagaatacaaaaagaatatcat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2802487 |
attaaacatagttttagttttcagccaaataacttatagctaaattcattttcagtaaatcacaacctgaaaaagcttaagaatacaaaaagaatatcat |
2802388 |
T |
|
| Q |
213 |
attctataagcctggcatagaagatagtaatgattctaatttgaaggatagaaaattatgcctaataagagcaagaaaaatattctggtattgaacctag |
312 |
Q |
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| T |
2802387 |
attctataagccgggcatagaagatagtaatgattctaatttgaaggacagaaaattatgcctaataagagcaagaaaaatattctggtattgaacctag |
2802288 |
T |
|
| Q |
313 |
attagaagacctttagaaatctgggaacattttagaccatgaacttaatggtattggtaagagaaaactctattatccaacaataatcatatctatgaaa |
412 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| | ||||||||||| ||||||||||| |||||||| |
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| T |
2802287 |
cttagaagacctttagaaatctgagaacattttagaccatgaacttaatggtattgttaagagcagactctattatc---caataatcataactatgaaa |
2802191 |
T |
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| Q |
413 |
cactcacggacaaaaacacaa |
433 |
Q |
| |
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||||||| |||| |||||||| |
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| T |
2802190 |
cactcacagacacaaacacaa |
2802170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 13 - 318
Target Start/End: Original strand, 1659027 - 1659329
Alignment:
| Q |
13 |
agaaattgatttaaactattatccgtgtcattcatttacacaattgagcatagaatacacatattgaaca--gttacaacaagaacaaattgataacaaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
1659027 |
agaaattgatttaaactattatccgtgtcattcatttacacaattgagcatagaatacacatattgaacatagttacaacaagaacaaatttataacaaa |
1659126 |
T |
|
| Q |
111 |
tcattaaacatagttttagttttcagccaaataacttatagctaaattcattttcagtaaatcacaacctgaaaaagcttaagaatacaaaaagaatatc |
210 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
1659127 |
tcattaaacatagttttagttttcagccaaatgacttatagctaaattcattttcagtaaatcacaacctgaa-----taaagaatacaaaaagaatatc |
1659221 |
T |
|
| Q |
211 |
atattctataagcctggcatagaagatagtaatgattctaatttgaaggatagaaaattatgcctaataagagcaagaaaaatattctggtattgaacct |
310 |
Q |
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| T |
1659222 |
atattctataagcctagcatagaagatagtaatgattctaatttgaaggatagaaaattatgcctaataagagcaagaaaaatattctggtattgaacct |
1659321 |
T |
|
| Q |
311 |
agattaga |
318 |
Q |
| |
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|||||||| |
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| T |
1659322 |
agattaga |
1659329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 314 - 433
Target Start/End: Original strand, 1678532 - 1678648
Alignment:
| Q |
314 |
ttagaagacctttagaaatctgggaacattttagaccatgaacttaatggtattggtaagagaaaactctattatccaacaataatcatatctatgaaac |
413 |
Q |
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||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||| |
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| T |
1678532 |
ttagaaggtctttagaaatctgagaacattttagaccatgaacttaatggtattggtaagagcaaactctattatc---caataatcataactatgaaac |
1678628 |
T |
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| Q |
414 |
actcacggacaaaaacacaa |
433 |
Q |
| |
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|||||| |||| |||||||| |
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| T |
1678629 |
actcacagacacaaacacaa |
1678648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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