View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16516_low_11 (Length: 436)
Name: NF16516_low_11
Description: NF16516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16516_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 210 - 415
Target Start/End: Original strand, 12289140 - 12289345
Alignment:
| Q |
210 |
agtgcgtgtcaagctgcttggtttgattccctaatgctagaactaagaatcaaagaagaagaagttgtgatattgatggttaacaacaaatcttccatta |
309 |
Q |
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| T |
12289140 |
agtgcgtgtcaagctgcttggtttgattccctaatgctagaactaagaatcaaagaagaagaagttgtgatattgatggttaacaacaaatcttccatta |
12289239 |
T |
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| Q |
310 |
atttaatcaagcatcttatagcacatcggaaaaataaacacattgaaacaagatttcaccttcttaccgagcaagtaactaaaggaaaatcggttttgga |
409 |
Q |
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| T |
12289240 |
atttaatcaagcatcttatagcacatcggaaaaacaaacacattgaaacaagatttcaccttcttacagagcaagtaactaaaggaaaatcggttttgga |
12289339 |
T |
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| Q |
410 |
gcactg |
415 |
Q |
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|||||| |
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| T |
12289340 |
gcactg |
12289345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 9 - 167
Target Start/End: Original strand, 12288985 - 12289143
Alignment:
| Q |
9 |
agcagagagaataacgagatatgtgataagaatgtaatgatgattggttactcggatgcatatatgtgtagagataaagatgacagaaaaagcaccgtag |
108 |
Q |
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| T |
12288985 |
agcaaagagaataacgagatatgtgataagaatgtaatgatgattggttactcggatgcatatatgtgtagagataaagatgacagaaaaagcactgtag |
12289084 |
T |
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| Q |
109 |
gatattgtttcttaggcaaggcaccaattgcctggtgttcgaaaatagaatcgatagtg |
167 |
Q |
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| T |
12289085 |
gatattgtttcttaggcaaggcactaattgcctggtgttcgaaaatagaatcaatagtg |
12289143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 345 - 414
Target Start/End: Original strand, 21547765 - 21547834
Alignment:
| Q |
345 |
aaacacattgaaacaagatttcaccttcttaccgagcaagtaactaaaggaaaatcggttttggagcact |
414 |
Q |
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| T |
21547765 |
aaacatattgaaacaagatttcactttcttagagagtaagtcactaaaggaaagttagttttggagcact |
21547834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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