View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16516_low_12 (Length: 429)
Name: NF16516_low_12
Description: NF16516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16516_low_12 |
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| [»] scaffold0685 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 14 - 411
Target Start/End: Complemental strand, 29549787 - 29549390
Alignment:
| Q |
14 |
aaattggaaaaaatttcagtagcaaatagaagttagtaccatttattaagttaagaattaaagtggaactttcgttaagctctgattgtaagagaggccc |
113 |
Q |
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| T |
29549787 |
aaattggaaaaaatttcagtagcaaatagaagttagtaccatttattaagttaagaattaaagtggaactttcgttaagctctgattgtaagagaggccc |
29549688 |
T |
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| Q |
114 |
taatgccactgctggattcataacaacgtggtcgatgttgttttctgttagaaatttcgttgcagcttcctcagctgaagtctttgcaaattgataccac |
213 |
Q |
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| T |
29549687 |
taatgccactgctggattcataacaacgtggtcgatgttgttttctgttagaaattttgttgcagcttcctcagctgaagtctttgcaaattgataccac |
29549588 |
T |
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| Q |
214 |
atctgaaatatgtaactttaaatgagcattattataacaactaaaatccacattaatttttgatcaataattgtctagtgaatggaaaaggggcacatta |
313 |
Q |
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| T |
29549587 |
atctgaaatatgtaactttacattagcattattataacaactaaaatcaacattaatttttgatcaataattgtctagtgaatggaaaaggggcacatta |
29549488 |
T |
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| Q |
314 |
catatatatagtaccttattttgccataagaaatcttgattcgaaaaccacgtttcatcaacttcaacttccggggttcgaggttttccagtatataa |
411 |
Q |
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| T |
29549487 |
catatatatagtaccttattttgccataagaaatcttgattcgaaaaccacgtttcatcaacttcaacttccggggttcgaggttttccagtatataa |
29549390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 50 - 224
Target Start/End: Complemental strand, 29556290 - 29556116
Alignment:
| Q |
50 |
taccatttattaagttaagaattaaagtggaactttcgttaagctctgattgtaagagaggccctaatgccactgctggattcataacaacgtggtcgat |
149 |
Q |
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| T |
29556290 |
taccctttattaagtcaaaaattaaggaggaacttccgttaagctctggttgtaagagaggccctatcgtcaccgctggattcataacaacgtagtcaat |
29556191 |
T |
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| Q |
150 |
gttgttttctgttagaaatttcgttgcagcttcctcagctgaagtctttgcaaattgataccacatctgaaatat |
224 |
Q |
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| T |
29556190 |
gtcgttttctgttagaaattttgttgctgcttcctcagctgaaacctttgcaaattggtaccacatctgaaatat |
29556116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 384
Target Start/End: Complemental strand, 29559413 - 29559344
Alignment:
| Q |
315 |
atatatatagtaccttattttgccataagaaatcttgattcgaaaaccacgtttcatcaacttcaacttc |
384 |
Q |
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| T |
29559413 |
atatatatagtaccttttgttcccataataaatctggatttgaaaaccatgtctcatcaactacaacttc |
29559344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0685 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0685
Description:
Target: scaffold0685; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 50 - 224
Target Start/End: Complemental strand, 5389 - 5215
Alignment:
| Q |
50 |
taccatttattaagttaagaattaaagtggaactttcgttaagctctgattgtaagagaggccctaatgccactgctggattcataacaacgtggtcgat |
149 |
Q |
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|||| |||||||||| || |||||| | ||||||| |||||||||||| ||||||||||||||||| | ||| ||||||||||||||||||| ||| || |
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| T |
5389 |
taccctttattaagtcaaaaattaaggaggaacttccgttaagctctggttgtaagagaggccctatcgtcaccgctggattcataacaacgtagtcaat |
5290 |
T |
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| Q |
150 |
gttgttttctgttagaaatttcgttgcagcttcctcagctgaagtctttgcaaattgataccacatctgaaatat |
224 |
Q |
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| T |
5289 |
gtcgttttctgttagaaattttgttgctgcttcctcagctgaaacctttgcaaattggtaccacatctgaaatat |
5215 |
T |
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