View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16516_low_13 (Length: 427)
Name: NF16516_low_13
Description: NF16516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16516_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 30882524 - 30882746
Alignment:
| Q |
18 |
attatgctcaatatagtaagtaaccttagaaatatggtccaagtattcatccgcgccgtgtataaactgtgtaccgcctcctggaaatttaaacttatct |
117 |
Q |
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| T |
30882524 |
attatgctcaatatagtaagtaaccttagaaatatggtccaagtattcatccgcgccgtgtataaactgtgtaccgcctcctggaaatttaaacttatct |
30882623 |
T |
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| Q |
118 |
ttgtctctggaaatccagttttggccacctttatcttcaactagacgagtatgaggaacattactgaaccatacctacacccacacnnnnnnnnnncact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30882624 |
ttgtctctggaaatccagttttggccacctttatcttcaactagacgagtatgaggaacattactgaaccatacctacacccacac-aaaaaaaaacact |
30882722 |
T |
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| Q |
218 |
aattcaatgatatgaacacataca |
241 |
Q |
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|||||||||||||||||||||||| |
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| T |
30882723 |
aattcaatgatatgaacacataca |
30882746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 310 - 415
Target Start/End: Original strand, 30882815 - 30882920
Alignment:
| Q |
310 |
tttgacctcatctctgcttttgggccatggaattggggcacgataccctttaggagcaggaaccaaacaattcaactttttaccatcttcaggacaatgt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30882815 |
tttgacctcatctctgcttttgggccatggaattggggcacgataccctttaggagcaggaaccaaacaattcaactttttaccatcttcaggacaatgt |
30882914 |
T |
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| Q |
410 |
cgttca |
415 |
Q |
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|||||| |
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| T |
30882915 |
cgttca |
30882920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 40 - 196
Target Start/End: Original strand, 34560676 - 34560832
Alignment:
| Q |
40 |
accttagaaatatggtccaagtattcatccgcgccgtgtataaactgtgtaccgcctcctggaaatttaaacttatctttgtctctggaaatccagtttt |
139 |
Q |
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| T |
34560676 |
accttagaaatatggtccaagtattgatctgctccgtgtataaattgggtgccacctcctggaaacttgaacttattcttgtctcttctaatccaatttt |
34560775 |
T |
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| Q |
140 |
ggccacctttatcttcaactagacgagtatgaggaacattactgaaccatacctaca |
196 |
Q |
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| T |
34560776 |
gaccccctttatcttccacaagacgagtgtggggaacattactgtaccacacctaca |
34560832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 188
Target Start/End: Complemental strand, 10287637 - 10287495
Alignment:
| Q |
46 |
gaaatatggtccaagtattcatccgcgccgtgtataaactgtgtaccgcctcctggaaatttaaacttatctttgtctctggaaatccagttttggccac |
145 |
Q |
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||||| || |||| ||||| ||| || || ||||| |||||||| || ||||||||||| ||| ||||| || | ||| || ||||| || ||||||| |
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| T |
10287637 |
gaaatctgatccaggtatttatctgctccatgtatgaactgtgttccacctcctggaaaaacaaatttatccttctttcttgatatccaattctggccac |
10287538 |
T |
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| Q |
146 |
ctttatcttcaactagacgagtatgaggaacattactgaacca |
188 |
Q |
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|||| || ||||| ||||| ||||| || |||||||||||||| |
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| T |
10287537 |
ctttgtcctcaaccagacgtgtatggggtacattactgaacca |
10287495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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