View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16516_low_14 (Length: 401)

Name: NF16516_low_14
Description: NF16516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16516_low_14
NF16516_low_14
[»] chr3 (1 HSPs)
chr3 (15-385)||(37315975-37316345)
[»] chr5 (1 HSPs)
chr5 (142-385)||(19206946-19207188)
[»] chr7 (3 HSPs)
chr7 (217-314)||(38883811-38883908)
chr7 (177-314)||(38893003-38893140)
chr7 (64-158)||(38883967-38884061)
[»] chr1 (7 HSPs)
chr1 (49-95)||(16175294-16175340)
chr1 (49-119)||(33115133-33115203)
chr1 (214-323)||(16223184-16223293)
chr1 (213-302)||(30620974-30621063)
chr1 (214-290)||(9700035-9700111)
chr1 (214-257)||(16183860-16183903)
chr1 (214-322)||(16175459-16175567)


Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 15 - 385
Target Start/End: Original strand, 37315975 - 37316345
Alignment:
Q  15 cataggggcaagagttagaccataaacnnnnnnncttcccattttgtccccaagccaaccaaagaaaagttggcctgctagagtgccacagagagcaaca 114  Q
    |||| ||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37315975 cataagggcaagagttagaccataaactttttttcttcccattttgtccccaagccaaccaaagaaaagttggcctgctagagtgccacagagagcaaca 37316074  T
Q  115 ccatttactgctgctgatacatttggaggcaaagttccaggcttgagtgcacctgggtgtgtgtaatatattcttccaagtaacttggtaacatttggta 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37316075 ccatttactgctgctgatacatttggaggcaaagttccaggcttgagtgcacctgggtgtgtgtaatatattcttccaagtaacttggtaacatttggta 37316174  T
Q  215 tgcagaaaaggtcatatgcatctgtgaagaatcccataccagcaattatgatggctgtgaaatggtaccattgtgttttggctgcatcaagggcagttag 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37316175 tgcagaaaaggtcatatgcatctgtgaagaatcccataccagcaattatgatggctgtgaaatggtaccattgtgttttggctgcatcaagggcagttag 37316274  T
Q  315 aactcctagttgttcacgagccatggatagatttttaaggtagagtgaccaattgagtctttggtaatagt 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37316275 aactcctagttgttcacgagccatggatagatttttaaggtagagtgaccaattgagtctttggtaatagt 37316345  T

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Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 142 - 385
Target Start/End: Complemental strand, 19207188 - 19206946
Alignment:
Q  142 ggcaaagttccaggcttgagtgcacctgggtgtgtgtaatatattcttccaagtaacttggtaacatttggtatgcagaaaaggtcatatgcatctgtga 241  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  19207188 ggcaaagttccaggcttgagtgcatctgggtgtgtgtagtatattcttccaagtaacttggtaacatttggtatgcagaaaaggtcatatgcatctgtgc 19207089  T
Q  242 agaatcccataccagcaattatgatggctgtgaaatggtaccattgtgttttggctgcatcaagggcagttagaactcctagttgttcacgagccatgga 341  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| | ||||||||||||||| |||||| |||||| ||     
T  19207088 agaatcccataccagcaattatgatggctgtgaaaaggtaccattgtgttttggctgcatgaagagaagttagaactcctagctgttcatgagccaagg- 19206990  T
Q  342 tagatttttaaggtagagtgaccaattgagtctttggtaatagt 385  Q
    |||||||| ||||| ||||||||||||||||||||||| |||||    
T  19206989 tagattttgaaggtggagtgaccaattgagtctttggttatagt 19206946  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 217 - 314
Target Start/End: Complemental strand, 38883908 - 38883811
Alignment:
Q  217 cagaaaaggtcatatgcatctgtgaagaatcccataccagcaattatgatggctgtgaaatggtaccattgtgttttggctgcatcaagggcagttag 314  Q
    ||||| || ||||| |||||||| ||||||||||||||||| || ||||| || ||||||||||||||||||||||| ||  ||||||| ||| ||||    
T  38883908 cagaacagatcataggcatctgtaaagaatcccataccagctatgatgattgcagtgaaatggtaccattgtgttttagccacatcaagcgcatttag 38883811  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 177 - 314
Target Start/End: Complemental strand, 38893140 - 38893003
Alignment:
Q  177 gtaatatattcttccaagtaacttggtaacatttggtatgcagaaaaggtcatatgcatctgtgaagaatcccataccagcaattatgatggctgtgaaa 276  Q
    ||||||||| | ||| || ||||||||||||   | ||||||||| || ||||| ||||| || ||||||||||| |||||||| ||||| ||||||||     
T  38893140 gtaatatatgcgtcccagcaacttggtaacaagggatatgcagaacagatcataggcatcagtaaagaatcccattccagcaatgatgattgctgtgaag 38893041  T
Q  277 tggtaccattgtgttttggctgcatcaagggcagttag 314  Q
    || |||||||| ||||| ||  ||||||| ||| ||||    
T  38893040 tgataccattgcgttttcgccacatcaagtgcatttag 38893003  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 158
Target Start/End: Complemental strand, 38884061 - 38883967
Alignment:
Q  64 ccaagccaaccaaagaaaagttggcctgctagagtgccacagagagcaacaccatttactgctgctgatacatttggaggcaaagttccaggctt 158  Q
    |||||||| |||||||||||||| ||||  || || ||||||| ||| |||||||| || || ||||||||||| |||||||| || || |||||    
T  38884061 ccaagccagccaaagaaaagttgccctgaaagtgttccacagaaagctacaccattcacagcagctgatacattgggaggcaatgtaccgggctt 38883967  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 16175294 - 16175340
Alignment:
Q  49 cttcccattttgtccccaagccaaccaaagaaaagttggcctgctag 95  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||    
T  16175294 cttcccattttgtccccaagccaaccaaagaataattggcctgctag 16175340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 33115203 - 33115133
Alignment:
Q  49 cttcccattttgtccccaagccaaccaaagaaaagttggcctgctagagtgccacagagagcaacaccatt 119  Q
    |||||||||||||| ||||||||||||||||||||||| ||||| || |  |||| || ||||||||||||    
T  33115203 cttcccattttgtcaccaagccaaccaaagaaaagttgtcctgccagtgctccactgaaagcaacaccatt 33115133  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 323
Target Start/End: Complemental strand, 16223293 - 16223184
Alignment:
Q  214 atgcagaaaaggtcatatgcatctgtgaagaatcccataccagcaattatgatggctgtgaaatggtaccattgtgttttggctgcatcaagggcagtta 313  Q
    ||||||||||| ||||||||||| |||||||||||||| |||||||| |  || |  ||||| || ||| ||||||| |||||  ||||||| ||| |||    
T  16223293 atgcagaaaagatcatatgcatcagtgaagaatcccattccagcaatcacaattgtagtgaagtgatacaattgtgtcttggccacatcaagtgcattta 16223194  T
Q  314 gaactcctag 323  Q
    | ||||||||    
T  16223193 gcactcctag 16223184  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 302
Target Start/End: Original strand, 30620974 - 30621063
Alignment:
Q  213 tatgcagaaaaggtcatatgcatctgtgaagaatcccataccagcaattatgatggctgtgaaatggtaccattgtgttttggctgcatc 302  Q
    ||||||||| || || |||||||| |||||||| ||||| ||||| || |  || |||||||||||||||||||||||||| ||| ||||    
T  30620974 tatgcagaatagatcgtatgcatcggtgaagaagcccattccagctatgacaattgctgtgaaatggtaccattgtgttttcgctacatc 30621063  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 214 - 290
Target Start/End: Original strand, 9700035 - 9700111
Alignment:
Q  214 atgcagaaaaggtcatatgcatctgtgaagaatcccataccagcaattatgatggctgtgaaatggtaccattgtgt 290  Q
    |||||||| || ||||| ||||| |||||||||||||| ||||||||||  || ||||| | |||||||||||||||    
T  9700035 atgcagaacagatcataggcatcagtgaagaatcccatgccagcaattactatagctgttacatggtaccattgtgt 9700111  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 16183903 - 16183860
Alignment:
Q  214 atgcagaaaaggtcatatgcatctgtgaagaatcccataccagc 257  Q
    ||||||||||| ||||||||||| |||||||||||||| |||||    
T  16183903 atgcagaaaagatcatatgcatcagtgaagaatcccattccagc 16183860  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 322
Target Start/End: Original strand, 16175459 - 16175567
Alignment:
Q  214 atgcagaaaaggtcatatgcatctgtgaagaatcccataccagcaattatgatggctgtgaaatggtaccattgtgttttggctgcatcaagggcagtta 313  Q
    ||||||||||| ||||| ||||| |||||||| ||||| ||||| || |  || |  |||||||||||| ||||||| || ||  |||| || ||| |||    
T  16175459 atgcagaaaagatcataagcatcagtgaagaaacccattccagctatcacaattgtagtgaaatggtacaattgtgtctttgccacatctagtgcattta 16175558  T
Q  314 gaactccta 322  Q
    |||||||||    
T  16175559 gaactccta 16175567  T

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