View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16516_low_15 (Length: 398)
Name: NF16516_low_15
Description: NF16516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16516_low_15 |
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| [»] chr3 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 398
Target Start/End: Original strand, 25601383 - 25601763
Alignment:
| Q |
18 |
ctaagaaactagactgtaagttctatgtgctaagaaactggtgcgccaaggtatttcacattccaattatttcctttacccctaaatttttaattattat |
117 |
Q |
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| T |
25601383 |
ctaagaaactagactgtaagttctatgtgctaagaaactggtgcgccaaggtatttcacattccaattatttcctttacccctaaatttttaattattat |
25601482 |
T |
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| Q |
118 |
tctacttcatacttaaaaatacattctagattttaattaggattggaatcttgctctataatcaatcctattgcacaatataattacattgtttttgttc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25601483 |
tctacttcatacttaaaaatacattctagattttaattaggattggaatcttgctctataatcaatcttattgcacaatataattacattgtttttgttc |
25601582 |
T |
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| Q |
218 |
tgattcagtgcttaacaaagtcgaaacaagggacatgtctgattttataaattttttgaataaagcaatacactctgagaacgagcatgaagacagattg |
317 |
Q |
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| T |
25601583 |
tgattcagtgcttaacaaagtcgaaacaagggacatgtctgattttataaaaaatttgaataaagcaatacactctgagaacgagcatgaagacagattg |
25601682 |
T |
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| Q |
318 |
agtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtcc |
398 |
Q |
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| T |
25601683 |
agtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgctgttcaaacttgcattttgtcc |
25601763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 89 - 397
Target Start/End: Original strand, 25596646 - 25596957
Alignment:
| Q |
89 |
tcctttacccctaaatttttaattattattctacttcatacttaaaaatacattctagatt--------ttaattaggattggaatcttgctctataatc |
180 |
Q |
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| T |
25596646 |
tcctttccccttatatttttaattattatcctacttcatacttcaaaatacattcaagattaacagattttaattaggatcggaagattgctttataa-- |
25596743 |
T |
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| Q |
181 |
aatcctattgcacaatataattacattgtttttgttctgattcagtgcttaacaaagtcgaaacaagggacatgtctgattttataaattttttgaataa |
280 |
Q |
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|| ||||||| ||||||||| ||||||||| || | |||| ||| ||||||||| |||||||| ||| || ||||||| || || || | || |
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| T |
25596744 |
-at--tattgcataatataattcaattgttttttatcagtttcaatgcctaacaaagtggaaacaagtgacgtgcctgatttcattaaaaaaatggagaa |
25596840 |
T |
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| Q |
281 |
agcaatacactctgagaacgagcatgaagacagattgagtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgtt |
380 |
Q |
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| T |
25596841 |
agcaatacactgtgaaaatgagaatgaagacagattgagcgatttacccgacaatgttcttcttcacattttgtcatttttgaataccaagtatgccgtt |
25596940 |
T |
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| Q |
381 |
caaacttgcattttgtc |
397 |
Q |
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| T |
25596941 |
caaacttgcattttgtc |
25596957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 398
Target Start/End: Complemental strand, 42603004 - 42602913
Alignment:
| Q |
307 |
aagacagattgagtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtcc |
398 |
Q |
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| T |
42603004 |
aagacaggctgagtgacttacctgactgtcttatccttcacattttgtcatttcttaactccaaacacaccgttcaaacttgcatcttgtcc |
42602913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 360
Target Start/End: Complemental strand, 55967153 - 55967098
Alignment:
| Q |
305 |
tgaagacagattgagtgatttacccgactgtgttctccttcatattttgtcatttt |
360 |
Q |
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| T |
55967153 |
tgaagacagataaagtgacttacccgacagtgttctccttcacattttatcatttt |
55967098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 398
Target Start/End: Original strand, 35968285 - 35968367
Alignment:
| Q |
316 |
tgagtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtcc |
398 |
Q |
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| T |
35968285 |
tgagtgagttagccgacggagttctccttcacattttgtcattattggatacaaaacaggtcgttcaaacttgcgttttgtcc |
35968367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 375
Target Start/End: Complemental strand, 36637069 - 36636999
Alignment:
| Q |
305 |
tgaagacagattgagtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatg |
375 |
Q |
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| T |
36637069 |
tgaagacaggctgagtgacttacccgacggtataatccttcacattttgtcatttttgaataccaaacatg |
36636999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 398
Target Start/End: Complemental strand, 38863278 - 38863184
Alignment:
| Q |
304 |
atgaagacagattgagtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtcc |
398 |
Q |
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| T |
38863278 |
atgaagacaggccgagtgacttacccgacggtattctcctttacattttgtcatcgttgaataccaaacatgccattcgaacttgtgttttgtcc |
38863184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 398
Target Start/End: Complemental strand, 33844405 - 33844312
Alignment:
| Q |
305 |
tgaagacagattgagtgatttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtcc |
398 |
Q |
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| T |
33844405 |
tgaagatagactaagtgacttacccgactgcattcttatttacattttgtcatttttgaaaaccgaaaacgccgttcaaacttgcattttgtcc |
33844312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 397
Target Start/End: Complemental strand, 17667196 - 17667123
Alignment:
| Q |
324 |
ttacccgactgtgttctccttcatattttgtcattttgtaataccaaacatgccgttcaaacttgcattttgtc |
397 |
Q |
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||||||||| ||||| ||||||||||||||||||||| || |||||| | | |||| ||||||| ||||||| |
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| T |
17667196 |
ttacccgacagtgttatccttcatattttgtcatttttaaacaccaaagaagttgttcgaacttgcgttttgtc |
17667123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 366 - 398
Target Start/End: Original strand, 32413648 - 32413680
Alignment:
| Q |
366 |
accaaacatgccgttcaaacttgcattttgtcc |
398 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
32413648 |
accaaacacgccgttcaaacttgcattttgtcc |
32413680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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