View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16516_low_17 (Length: 367)
Name: NF16516_low_17
Description: NF16516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16516_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 10 - 348
Target Start/End: Original strand, 53500544 - 53500882
Alignment:
| Q |
10 |
tagattatactaaagaaaatccttaaaagcggtcattttaacaggaaaccatcattagtaaaatgagaaacattgataaaataattaggatccaacaaat |
109 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53500544 |
tagattattataaagaaaatccttaaaagcggtcattttaacacgaaaccatcattagtaaaatgagaaacattgataaaataattaggatccaacaaat |
53500643 |
T |
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| Q |
110 |
gatttaataatgcaatgattttcaaatatttaggagcaaaccaatgcgcatgaaaatgttaaatagcccaacctaacatacttaaaaactctcacctctt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53500644 |
gatttaataatgcaatgattttcaaatatttaggagcaaaccaatgcgcatgaaaatgttaaatagcccaacctaacatacttaaaaactctcacctctt |
53500743 |
T |
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| Q |
210 |
gtttaaaaccattgttatgagcctcttcctttttcaaatgagagtctagcacaaacatggggaagtagcagttctcaacattcattttctttatttctga |
309 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53500744 |
gtttaaaaccactgttatgagcctcttcctttttcaaatgagagtctagcacaaacatggggaagtagcagttctcaacattcattttctttatttctga |
53500843 |
T |
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| Q |
310 |
atcnnnnnnngcctgcacatttgtttgaaatatgaaagc |
348 |
Q |
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||| ||||||||||||||||||||||||||||| |
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| T |
53500844 |
atcaaaaaaagcctgcacatttgtttgaaatatgaaagc |
53500882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 20 - 348
Target Start/End: Original strand, 16071750 - 16072085
Alignment:
| Q |
20 |
taaagaaaatccttaaaagcggtcattttaacaggaaaccatcattagtaaaatgagaaacattgataaaataattaggatccaacaaatgatttaataa |
119 |
Q |
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||||||||||| |||||||| ||||||| |||| |||| |||| | ||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
16071750 |
taaagaaaatcgttaaaagcagtcatttcaacacaaaac-atca--acgaaaatgagaaacattgataaaataattaggaacaaacaaatgatttaataa |
16071846 |
T |
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| Q |
120 |
tgcaatgattttcaaatatttaggagcaaaccaatgcgcatga----------aaatgttaaatagcccaacctaacatacttaaaaactctcacctctt |
209 |
Q |
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| T |
16071847 |
tgcaatgattttcaaatatttaagagaaaaccaataagcatgatatgcaaggaaaatgttaaatagcccaacccaacaaacttaaaaactctcacctctg |
16071946 |
T |
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| Q |
210 |
gtttaaaaccattgttatgagcctcttcctttttcaaatgagagtctagcacaaacatggggaagtagcagttctcaacattcattttctttatttctga |
309 |
Q |
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| T |
16071947 |
gcttaaaaccgtcataatgggccttctcctttttcaaatgacattctagcacaaacatagggaagtagcagctctcaacattcattttctttatctctgg |
16072046 |
T |
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| Q |
310 |
atcnnnnnnngcctgcacatttgtttgaaatatgaaagc |
348 |
Q |
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| T |
16072047 |
attaaaaaaagcctgcacatttgtttgagatatgaaagc |
16072085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 179 - 348
Target Start/End: Original strand, 53492762 - 53492931
Alignment:
| Q |
179 |
aacctaacatacttaaaaactctcacctcttgtttaaaaccattgttatgagcctcttcctttttcaaatgagagtctagcacaaacatggggaagtagc |
278 |
Q |
| |
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|||| |||| ||||||||||||||||| ||||||||||||| | ||||| |||| |||||||||||||| |||||||||||||||| |||||||||| |
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| T |
53492762 |
aaccaaacaaacttaaaaactctcaccacttgtttaaaaccttcattatgggccttctcctttttcaaatggcagtctagcacaaacatagggaagtagc |
53492861 |
T |
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| Q |
279 |
agttctcaacattcattttctttatttctgaatcnnnnnnngcctgcacatttgtttgaaatatgaaagc |
348 |
Q |
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| T |
53492862 |
agttctcaacattcattttctttatttctgaatcaaaaaaagcctgcacatttgtttgagatatgaaagc |
53492931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 53492634 - 53492767
Alignment:
| Q |
20 |
taaagaaaatccttaaaagcggtcattttaacaggaaaccatcattagtaaaatgagaaacattgataaaataattaggatccaacaaatgatttaataa |
119 |
Q |
| |
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|||||||||| |||| || ||||||||| || |||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
53492634 |
taaagaaaattgttaacagaagtcattttaccacaaaaccaacatcagtaaaatgagaaacattgataaaataattaggaagcaacaaatgatttaataa |
53492733 |
T |
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| Q |
120 |
tgcaatgattttcaaatatttaggagcaaaccaa |
153 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
53492734 |
tgcaatgattttcaaatatttaggagcaaaccaa |
53492767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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