View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16516_low_18 (Length: 333)
Name: NF16516_low_18
Description: NF16516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16516_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 13 - 319
Target Start/End: Complemental strand, 42893270 - 42892964
Alignment:
| Q |
13 |
catcaaacatcgaaaacattctctaatcaatgacaaccaagacatttactatcactaaaacatcactcaatgggaaaagaaataaaagcaaatggacctt |
112 |
Q |
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| T |
42893270 |
catcaaacatcgaaaacattctctaatcaatgacaaccaagacatgtactatcactaaaacatcactcaatgggaaaagaaataaaagcaaatggacctt |
42893171 |
T |
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| Q |
113 |
gaaatcttagcgggcaagctgcttttcatcaaagcgttgctaggttacatcgacagacaggttcaacaaagactgcaacacacaagaatcaatttgttta |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42893170 |
gaaatcttagcgggcaagctgcttttcatcaaagcgttgctaagttacatcgacagacaggttcaacaaagactgcaacacacaagaatcaatttgttta |
42893071 |
T |
|
| Q |
213 |
aaatatacccataagactaacaccagaaaaaggaagctagaatataacactattatcaaacaaataataacgcctatgttgacatatattatgtacactg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42893070 |
aaatatacccataagactaacaccagaaaaaggaagctagaatataacactattatcaaacaaataataacgcctatgttgacatatattatgtacactg |
42892971 |
T |
|
| Q |
313 |
acctttg |
319 |
Q |
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||||||| |
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| T |
42892970 |
acctttg |
42892964 |
T |
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