View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16516_low_19 (Length: 333)
Name: NF16516_low_19
Description: NF16516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16516_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 315
Target Start/End: Original strand, 29146838 - 29147132
Alignment:
| Q |
13 |
aaaatctcaatatagtgttaatata--gtgcagcacaagtgttaaacatttaggtttcttatttgatcgatgtcggtgcctataaaaaatatgtgttatg |
110 |
Q |
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| T |
29146838 |
aaaatctcaatatagtgttaatatatagtgcagcacaagtgttaaa----------tcttatttgatcgatgtcgatacctataaaaaacttgtgttatc |
29146927 |
T |
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| Q |
111 |
agaggtcaagttttaataggcactgacatcgctcaatcaccaattatcatatgtacatctttaaatttagttgcgattaactcaaatattttcataatat |
210 |
Q |
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| T |
29146928 |
agagatcaaattttaataggcactgacatcgctcaatccctaattatcatatgtacatctttaaatttagtcgcgattaactcaaatattttcataatat |
29147027 |
T |
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| Q |
211 |
ttgataacttaacaggatgacaatggctctagggttattctattatggtcttcgagacacaactgctgcttattcagtcaattttctcaacttggtacct |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29147028 |
ttgataacttaacaggatgacaatggctctagggttattctattatggtcttcgagacacaactgctgcttattcagtcaattttctcaacttggtacct |
29147127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 223 - 312
Target Start/End: Complemental strand, 29224615 - 29224526
Alignment:
| Q |
223 |
caggatgacaatggctctagggttattctattatggtcttcgagacacaactgctgcttattcagtcaattttctcaacttggtacctat |
312 |
Q |
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| T |
29224615 |
caggatgacaatggctctagggttattctattacggtcttcgagacacaactgctacttattccgtcaactttctcaacttggttcctat |
29224526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 222 - 315
Target Start/End: Complemental strand, 5304319 - 5304226
Alignment:
| Q |
222 |
acaggatgacaatggctctagggttattctattatggtcttcgagacacaactgctgcttattcagtcaattttctcaacttggtacctatttg |
315 |
Q |
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||||||||||||||||| | || ||||||||||||||||| ||||||||| ||||| ||||| | ||||| |||||||||||||| || ||||| |
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| T |
5304319 |
acaggatgacaatggcttttggattattctattatggtctccgagacacatctgctacttatgctgtcaactttctcaacttggttcccatttg |
5304226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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