View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16516_low_2 (Length: 618)
Name: NF16516_low_2
Description: NF16516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16516_low_2 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 504; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 1 - 618
Target Start/End: Original strand, 53499972 - 53500577
Alignment:
| Q |
1 |
ttcatcctctgttgcaaaagcaccgtgaccttcttgccaaagaaactcacgacccctgcaatcaaaatttgtataagcacccaaaatgggactatgaaca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53499972 |
ttcatcctctgttgcaaaagcaccgtgaccttcttgccaaagaaactcacgactcctgcaatcaaaatttgtataagcacccaaaatgggactatgaaca |
53500071 |
T |
|
| Q |
101 |
agttccaatataaaaacaacatccaagactagttcacaagacgagtatccattcaaaaagaaaatgtgcagaactttaaggcattatgtaagacataaaa |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53500072 |
agtttcaatataaaaacaacatccaagactagttcacaagacgagtatccattcaaaaagaaaatgtgcagaactttaaggcattatgtaagacataaaa |
53500171 |
T |
|
| Q |
201 |
ctacaacgcataatatcaatttttagaattttttaagccttttatttaaagcttgaaagttttgttatgttatatcaaccaacgcattgttataacatgg |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||| ||| ||||||||||| |
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| T |
53500172 |
ctacaacgcataatatcaatttttagaattttttaa-------------agcttgaaagttttgttacgttacatcaaccaacacatcattataacatgg |
53500258 |
T |
|
| Q |
301 |
aaaaaggaaaagatggtnnnnnnnnn-gtacctgatgaacggtgtgggatctccgaccacccatctaacagcattgcaccattgattaagtttcaaaggc |
399 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53500259 |
aaaaaggaaaagatggtaaaaaaaaaagtacctgatgaacggtgtgggatctccgaccacccatctaacagcattgcaccattgattaagtttcaaaggc |
53500358 |
T |
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| Q |
400 |
aagtcacgatgtccccttatccacttagagtaatagggatacatgatagtttcactacttggacgaagagcaagatgagcttccaaatcagactgtccag |
499 |
Q |
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| T |
53500359 |
aagtcacgatgtccccttatccacttagagtaatagggatacatgatagtttcactacttggacgaagagcaagatgagcttccaaatcagactgtccag |
53500458 |
T |
|
| Q |
500 |
actttgttacccaagcaacctagaaaacaagcaagataatcagaaaaatactaataatgtccttttgggaagcaatgaagctgtatagattataataaag |
599 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
53500459 |
actttgttacccaagcaacctagaaaacaagcaagataatcagaaaaatactaataatgtccttttgggaagcaatgaagttgtatagattattataaag |
53500558 |
T |
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| Q |
600 |
aaaatccttaaaagcggtc |
618 |
Q |
| |
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||||||||||||||||||| |
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| T |
53500559 |
aaaatccttaaaagcggtc |
53500577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 147 - 604
Target Start/End: Original strand, 53492184 - 53492643
Alignment:
| Q |
147 |
atccattcaaaaagaaaatgtgcagaactttaaggcattatgtaagacataaaactacaacgcataatatcaatttttagaattttttaagccttttatt |
246 |
Q |
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|||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||||||| |||| |
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| T |
53492184 |
atccattcaaaaagaaaatgggcagaattttaaggcattatgtaagacatataactacaatgcataatatcaatttttggaattgtttaagcctcttata |
53492283 |
T |
|
| Q |
247 |
taaagcttgaaagttttg-ttatgttatatcaaccaacgcattgttataacatggaaaaaggaaaagatggtnnnnnnnnn-gtacctgatgaacggtgt |
344 |
Q |
| |
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||||||||||||||||| ||| |||| | || ||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
53492284 |
taaagcttgaaagttttcattacgttacagcagccaacacattgttataacatggaaaaaggaaaagatggtaaaaaagaaagtacctgatgaatggtgt |
53492383 |
T |
|
| Q |
345 |
gggatctccgaccacccatctaacagcattgcaccattgattaagtttcaaaggcaagtcacgatgtccccttatccacttagagtaatagggatacatg |
444 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53492384 |
gggatctccgaccacccatctaacaacattgcaccattgattgagtttcaaaggcaagtcacgatgtccccttatccacttagagtaatagggatacatg |
53492483 |
T |
|
| Q |
445 |
atagtttcactacttggacgaagagcaagatgagcttccaaatcagactgtccagactttgttacccaagcaacctagaaaacaagcaagataatcagaa |
544 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53492484 |
atagtttcactacttggacgaagagcaagatgagcttccaaatcagaatgtccagactttgttacccaagcaacctagaaaacaagcaagataatcagaa |
53492583 |
T |
|
| Q |
545 |
aaatactaataatgtccttttgggaagcaatgaagctgtatagattataataaagaaaat |
604 |
Q |
| |
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|||||||||||||||||| ||||||||| |||| || |||||||| ||||||||||| |
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| T |
53492584 |
aaatactaataatgtcctcaagggaagcaacgaagttgcatagattactataaagaaaat |
53492643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 330 - 614
Target Start/End: Original strand, 16071484 - 16071769
Alignment:
| Q |
330 |
cctgatgaacggtgtgggatctccgaccacccatctaacagcattgcaccattgattaagtttcaaaggcaagtcacgatgtccccttatccacttagag |
429 |
Q |
| |
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|||||| || ||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
16071484 |
cctgattaatggtatgggatctccaaccacccatctaaccgcattgcaccattgattaagtttcaaaggcaagtcgcggtgtccccttatccacttagag |
16071583 |
T |
|
| Q |
430 |
taatagggatacatgatagtttcactacttggacgaagagcaagatgagcttccaaatcagactgtccagactttgttacccaagcaacctagaaaacaa |
529 |
Q |
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||||||||||| || |||| |||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
16071584 |
taatagggatatattatagcttcactacttagacgaacagcaagatgagtttccaaatcagactgtccagactttgttacccaagcaacctagaaaacga |
16071683 |
T |
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| Q |
530 |
gca-agataatcagaaaaatactaataatgtccttttgggaagcaatgaagctgtatagattataataaagaaaatccttaaaagc |
614 |
Q |
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|| | |||||||||||||||| |||||| |||| |||||||||| | |||||| ||| |||||||||||| |||||||| |
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| T |
16071684 |
acatatataatcagaaaaatacaaataatatcctcaaaaaaagcaatgaatttatatagactattataaagaaaatcgttaaaagc |
16071769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 53491973 - 53492087
Alignment:
| Q |
1 |
ttcatcctctgttgcaaaagcaccgtgaccttcttgccaaagaaactcacgacccctgcaatcaaaatttgtataagcaccc-aaaatgggactatgaac |
99 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||| ||||||||||||| ||| |
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| T |
53491973 |
ttcatcctctgttgcaaaagcactgtgaccttcttgccaaaggaactcacgactcctgcaatcaaaatttgaataagcaccctaaaatgggactataaac |
53492072 |
T |
|
| Q |
100 |
aagttccaatataaa |
114 |
Q |
| |
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||||||||||||||| |
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| T |
53492073 |
aagttccaatataaa |
53492087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 16071210 - 16071268
Alignment:
| Q |
14 |
gcaaaagcaccgtgaccttcttgccaaagaaactcacgacccctgcaatcaaaatttgt |
72 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
16071210 |
gcaaaagcactgtgtccttcttgccaaagaaactcacgactcctgcaatcaaaatttgt |
16071268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 330 - 520
Target Start/End: Complemental strand, 45353706 - 45353516
Alignment:
| Q |
330 |
cctgatgaacggtgtgggatctccgaccacccatctaacagcattgcaccattgattaagtttcaaaggcaagtcacgatgtccccttatccacttagag |
429 |
Q |
| |
|
||||||||| |||||||||| | || | ||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45353706 |
cctgatgaatggtgtgggattgctgaactcccatctaacaacattgcaccactgattaagcttcaaaggcaagtcacgatgtccccttatccacttagag |
45353607 |
T |
|
| Q |
430 |
taatagggatacatgatagtttcactacttggacgaagagcaagatgagcttccaaatcagactgtccagactttgttacccaagcaacct |
520 |
Q |
| |
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|| || |||||||| | |||||||||| ||||||||| ||||| | || || |||||||| | |||||| || || ||||||||||||| |
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| T |
45353606 |
tagtaaggatacataacagtttcactagttggacgaatagcaataggaatctctaaatcagattctccagatttggtcacccaagcaacct |
45353516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 45354320 - 45354243
Alignment:
| Q |
5 |
tcctctgttgcaaaagcaccgtgaccttcttgccaaagaaactcacgacccctgcaatcaaaatttgtataagcaccc |
82 |
Q |
| |
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|||| ||||||||||||| ||| ||||||||||||||||||||||||| |||||||| |||||| ||||||| |||| |
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| T |
45354320 |
tcctttgttgcaaaagcagtgtgtccttcttgccaaagaaactcacgactcctgcaattaaaattggtataagtaccc |
45354243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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