View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16516_low_21 (Length: 320)

Name: NF16516_low_21
Description: NF16516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16516_low_21
NF16516_low_21
[»] chr1 (12 HSPs)
chr1 (17-308)||(2938463-2938750)
chr1 (123-308)||(33333285-33333467)
chr1 (123-252)||(33332180-33332308)
chr1 (123-307)||(46015731-46015912)
chr1 (135-252)||(2939717-2939833)
chr1 (123-171)||(16963433-16963481)
chr1 (123-173)||(51597964-51598014)
chr1 (123-172)||(16962013-16962062)
chr1 (123-168)||(51599443-51599488)
chr1 (123-252)||(46014704-46014832)
chr1 (123-173)||(50682592-50682642)
chr1 (270-298)||(48222304-48222332)
[»] scaffold0029 (2 HSPs)
scaffold0029 (123-308)||(71703-71884)
scaffold0029 (123-252)||(70672-70801)
[»] chr7 (6 HSPs)
chr7 (123-308)||(45087068-45087250)
chr7 (123-252)||(45088179-45088307)
chr7 (123-173)||(21709161-21709211)
chr7 (123-173)||(26024890-26024940)
chr7 (123-168)||(45596872-45596918)
chr7 (125-173)||(21710606-21710654)
[»] chr4 (15 HSPs)
chr4 (123-308)||(11038580-11038762)
chr4 (123-173)||(36220605-36220655)
chr4 (123-173)||(51645976-51646026)
chr4 (118-173)||(36219405-36219460)
chr4 (123-173)||(702655-702705)
chr4 (123-173)||(756490-756540)
chr4 (123-173)||(770954-771004)
chr4 (123-173)||(35060458-35060508)
chr4 (123-173)||(701636-701686)
chr4 (123-173)||(769935-769985)
chr4 (123-173)||(16038278-16038328)
chr4 (123-173)||(16039683-16039733)
chr4 (123-173)||(35055336-35055386)
chr4 (124-167)||(50551425-50551468)
chr4 (123-173)||(757504-757554)
[»] chr8 (11 HSPs)
chr8 (123-308)||(9311024-9311206)
chr8 (123-308)||(14816573-14816754)
chr8 (123-308)||(14828986-14829167)
chr8 (123-173)||(44633779-44633829)
chr8 (123-252)||(9312103-9312231)
chr8 (123-173)||(39270799-39270849)
chr8 (123-173)||(39567066-39567116)
chr8 (123-173)||(45378553-45378603)
chr8 (123-170)||(39568516-39568563)
chr8 (123-157)||(14819391-14819425)
chr8 (123-173)||(44632709-44632759)
[»] chr6 (7 HSPs)
chr6 (123-226)||(29744784-29744886)
chr6 (123-226)||(29751093-29751195)
chr6 (123-173)||(21611918-21611968)
chr6 (123-171)||(5660198-5660246)
chr6 (123-173)||(14403691-14403741)
chr6 (123-173)||(21282820-21282870)
chr6 (121-173)||(18683551-18683603)
[»] chr3 (9 HSPs)
chr3 (123-226)||(27688489-27688591)
chr3 (123-226)||(27695528-27695630)
chr3 (123-308)||(39992367-39992549)
chr3 (123-173)||(20184451-20184501)
chr3 (123-173)||(39991508-39991558)
chr3 (123-170)||(21815911-21815958)
chr3 (123-173)||(20185818-20185868)
chr3 (123-173)||(21817405-21817455)
chr3 (123-173)||(49221510-49221560)
[»] scaffold0394 (1 HSPs)
scaffold0394 (123-226)||(14273-14376)
[»] chr2 (7 HSPs)
chr2 (123-173)||(36889752-36889802)
chr2 (123-298)||(13810463-13810633)
chr2 (123-173)||(36888341-36888391)
chr2 (123-173)||(7184884-7184934)
chr2 (123-170)||(35738366-35738413)
chr2 (123-252)||(13809428-13809555)
chr2 (133-170)||(23991279-23991316)
[»] scaffold0194 (2 HSPs)
scaffold0194 (123-173)||(19250-19300)
scaffold0194 (123-171)||(18071-18119)
[»] chr5 (1 HSPs)
chr5 (123-168)||(19718900-19718945)
[»] scaffold0031 (2 HSPs)
scaffold0031 (123-173)||(123427-123477)
scaffold0031 (123-173)||(134303-134353)


Alignment Details
Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 17 - 308
Target Start/End: Original strand, 2938463 - 2938750
Alignment:
Q  17 atttttggcattttgcttgcttcccgaaattggttcaaaatcgaaatttggtttaataatgacgtagtggcaagtgagttaaaagttatataacaattaa 116  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2938463 atttttggcattttgcttgcttcccaaaattggttcaaaatcgaaatttggttcaataatgacgtagtggcaagtgagttaaaagttatataacaattaa 2938562  T
Q  117 ctatgg-ttaattgctattttagttccttaactaattttttggtatcggtttggtccccataactnnnnnnnggtccgttttaatattttaacttttgtt 215  Q
    || ||| |||||||||| |||||| |||||||||| ||||||||||| ||||||   ||||||||       |||||| ||||||||||||| ||||| |    
T  2938563 ctgtggcttaattgcta-tttagtcccttaactaa-tttttggtatcagtttgg---ccataactaaaaaaaggtccg-tttaatattttaatttttgct 2938656  T
Q  216 ctgttacatgtgttgatcatttccgttaattttattc-nnnnnnnnncgcttgggtttattttcttcatcttctccatctcaatccttcatctc 308  Q
    | ||||||||| |||||||||||||||||||||||||          || | ||||||||||||||||||||||||||||||||||||||||||    
T  2938657 ccgttacatgttttgatcatttccgttaattttattcaaaaaaaaaacgttagggtttattttcttcatcttctccatctcaatccttcatctc 2938750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 123 - 308
Target Start/End: Complemental strand, 33333467 - 33333285
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccccataactnnnnnnnggtccgttttaatattttaacttttgttctgttac 222  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||| |        |||||||||  |||||||| ||||| || |||||    
T  33333467 ttaattgctattttagtcccttaactaattttttggtatcagtttggt-cccataattaaaaaaatgtccgttttggtattttaatttttgctccgttac 33333369  T
Q  223 atgtgttgatcatttccgttaattttattcnnnnnnnnncgcttgggtttattttcttcatcttctccatctcaatccttcatctc 308  Q
    || | ||| ||||||||||||||||||||          || |  ||||||||||||||||||| |||||||||||||||||||||    
T  33333368 atcttttggtcatttccgttaattttatt--aaaaaaaacgttaaggtttattttcttcatcttttccatctcaatccttcatctc 33333285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 123 - 252
Target Start/End: Original strand, 33332180 - 33332308
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccccataactnnnnnnnggtccgttttaatattttaacttttgttctgttac 222  Q
    |||||||||||||||||  |||||||| || |||||||||||||||||||| ||||||        ||||||||| ||||||||||||||| || |||||    
T  33332180 ttaattgctattttagtctcttaactagttgtttggtatcggtttggtccc-ataactaaaaaaatgtccgttttgatattttaacttttgctccgttac 33332278  T
Q  223 atgtgttgatcatttccgttaattttattc 252  Q
     ||| ||| |||||||||||||||||||||    
T  33332279 ttgttttggtcatttccgttaattttattc 33332308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 123 - 307
Target Start/End: Complemental strand, 46015912 - 46015731
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccccataactnnnnnnnggtccgttttaatattttaacttttgttctgttac 222  Q
    ||||||| ||||||||| |||||| |||||||||||||||| ||||||||| ||||||        |||||||||  ||||||||||||||||| ||| |    
T  46015912 ttaattgttattttagtcccttaagtaattttttggtatcgctttggtccc-ataactaaaaaaaagtccgttttggtattttaacttttgttccgtttc 46015814  T
Q  223 atgtgttgatcatttccgttaattttattcnnnnnnnnncgcttgggtttattttcttcatcttctccatctcaatccttcatct 307  Q
     ||| ||  || ||||||||||||||||||         || | |||||||||||||||||| ||||||||||||||||||||||    
T  46015813 ttgttttagtcctttccgttaattttattcaaaaaaa--cgttagggtttattttcttcatcctctccatctcaatccttcatct 46015731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 252
Target Start/End: Complemental strand, 2939833 - 2939717
Alignment:
Q  135 ttagttccttaactaattttttggtatcggtttggtccccataactnnnnnnnggtccgttttaatattttaacttttgttctgttacatgtgttgatca 234  Q
    ||||| ||||||||||| ||||||||||||||||||||  ||||||        ||| |||||  |||||||||||||| || ||||| ||| ||| |||    
T  2939833 ttagtcccttaactaatattttggtatcggtttggtcct-ataactaaaaaaatgtctgttttggtattttaacttttgctccgttacttgttttggtca 2939735  T
Q  235 tttccgttaattttattc 252  Q
    ||||||||||||||||||    
T  2939734 tttccgttaattttattc 2939717  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 16963481 - 16963433
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtc 171  Q
    ||||||| |||||| |||||||||||||||||||||||||| |||||||    
T  16963481 ttaattgttattttcgttccttaactaattttttggtatcgatttggtc 16963433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 51597964 - 51598014
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    |||||||||||||| || |||||||| |||||||||||||| |||||||||    
T  51597964 ttaattgctattttcgtcccttaacttattttttggtatcgctttggtccc 51598014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 16962013 - 16962062
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtcc 172  Q
    |||||||||||||| || ||||||||||||||||||||| | ||||||||    
T  16962013 ttaattgctatttttgtcccttaactaattttttggtattgctttggtcc 16962062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 51599488 - 51599443
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttg 168  Q
    |||||||||||||| || ||||||||||||||||||||||| ||||    
T  51599488 ttaattgctattttcgtcccttaactaattttttggtatcgctttg 51599443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 252
Target Start/End: Original strand, 46014704 - 46014832
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccccataactnnnnnnnggtccgttttaatattttaacttttgttctgttac 222  Q
    |||||||||||||||||   ||||||||||||||||||||| || | | |||||||||        ||| |||||  |||||||||||||| ||||| ||    
T  46014704 ttaattgctattttagtcatttaactaattttttggtatcgcttcgat-cccataactaaaaaaaagtctgttttggtattttaacttttgctctgtcac 46014802  T
Q  223 atgtgttgatcatttccgttaattttattc 252  Q
    |||| ||  || ||||||||||| ||||||    
T  46014803 atgttttagtcctttccgttaatattattc 46014832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 50682642 - 50682592
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    |||||||||||||| || |||||| || ||||||||||||| |||||||||    
T  50682642 ttaattgctattttggtcccttaattatttttttggtatcgctttggtccc 50682592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 270 - 298
Target Start/End: Complemental strand, 48222332 - 48222304
Alignment:
Q  270 tttattttcttcatcttctccatctcaat 298  Q
    |||||||||||||||||||||||||||||    
T  48222332 tttattttcttcatcttctccatctcaat 48222304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 123 - 308
Target Start/End: Complemental strand, 71884 - 71703
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccccataactnnnnnnnggtccgttttaatattttaacttttgttctgttac 222  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||       |||||||| |  |||||||||||||| || |||||    
T  71884 ttaattgctattttagtcccttaactaattttttggtatcgctttggt-cccataactaaaaaaaggtccgttgtggtattttaacttttgctccgttac 71786  T
Q  223 atgtgttgatcatttccgttaattttattcnnnnnnnnncgcttgggtttattttcttcatcttctccatctcaatccttcatctc 308  Q
    |||| ||| || ||||||||||||||||||         || | ||||||||||||||||||||||||||||||||||||||||||    
T  71785 atgttttggtcctttccgttaattttattc---aaaaaacgttagggtttattttcttcatcttctccatctcaatccttcatctc 71703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 123 - 252
Target Start/End: Original strand, 70672 - 70801
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccccataact-nnnnnnnggtccgttttaatattttaacttttgttctgtta 221  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||         |||| ||||  |||||||||||||  || ||||    
T  70672 ttaattgctattttagtcccttaactaattttttggtatcggtttggt-cccataactaaaaaaaaagtccattttggtattttaacttttactccgtta 70770  T
Q  222 catgtgttgatcatttccgttaattttattc 252  Q
    ||||| ||| || ||||||||||||||||||    
T  70771 catgttttggtcctttccgttaattttattc 70801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 123 - 308
Target Start/End: Original strand, 45087068 - 45087250
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccccataactnnnnnnnggtccgttttaatattttaacttttgttctgttac 222  Q
    ||||||| ||||||||| | |||||||||||||||||||||||||||| |||||||||       ||||||||||  |||||||||||||| || |||||    
T  45087068 ttaattgttattttagtcctttaactaattttttggtatcggtttggt-cccataactaaaaaaaggtccgttttggtattttaacttttgctccgttac 45087166  T
Q  223 atgtgttgatcatttccgttaattttattcnnnnnnnnncgcttgggtttattttcttcatcttctccatctcaatccttcatctc 308  Q
    |||| ||| || ||||||||||||||||||         || | || |||||||||||||||||||||||||||||||||||||||    
T  45087167 atgttttggtcttttccgttaattttattc--aaaaaaacgttaggatttattttcttcatcttctccatctcaatccttcatctc 45087250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 123 - 252
Target Start/End: Complemental strand, 45088307 - 45088179
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccccataactnnnnnnnggtccgttttaatattttaacttttgttctgttac 222  Q
    ||||||||||||||||| |||||||||||| ||||||||| ||||||| |||||||||       ||||||||||  |||||||||||||| || |||||    
T  45088307 ttaattgctattttagtcccttaactaattgtttggtatcagtttggt-cccataactaaaaaaaggtccgttttggtattttaacttttgctcagttac 45088209  T
Q  223 atgtgttgatcatttccgttaattttattc 252  Q
     ||| ||| || ||||||||||||||||||    
T  45088208 ttgttttggtcctttccgttaattttattc 45088179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 21709161 - 21709211
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    |||||||||||||| || |||||||||||||||| |||||| |||||||||    
T  21709161 ttaattgctattttcgtcccttaactaattttttagtatcgctttggtccc 21709211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 26024890 - 26024940
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    ||||||||||| || || |||||||| |||||||||||||| |||||||||    
T  26024890 ttaattgctatcttcgtcccttaacttattttttggtatcgctttggtccc 26024940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 45596872 - 45596918
Alignment:
Q  123 ttaattgctattttagttccttaactaa-ttttttggtatcggtttg 168  Q
    ||||||||||||||| | |||||||||| ||||||||||||||||||    
T  45596872 ttaattgctattttaatcccttaactaatttttttggtatcggtttg 45596918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 21710654 - 21710606
Alignment:
Q  125 aattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    ||||| |||||| || |||||||| |||||||||||||| |||||||||    
T  21710654 aattgatatttttgtcccttaacttattttttggtatcgctttggtccc 21710606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 123 - 308
Target Start/End: Original strand, 11038580 - 11038762
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccccataactnnnnnnnggtccgttttaatattttaacttttgttctgttac 222  Q
    ||||||||||||||||| ||||| ||||||||||||||| | ||||||||| ||||||        ||| |||||  ||||||||||||||||||||| |    
T  11038580 ttaattgctattttagtcccttagctaattttttggtattgctttggtccc-ataactaaaaaaaagtctgttttggtattttaacttttgttctgtttc 11038678  T
Q  223 atgtgttgatcatttccgttaattttattcnnnnnnnnncgcttgggtttattttcttcatcttctccatctcaatccttcatctc 308  Q
     ||| ||| || ||||||||||||||||||         || | ||||||||||||||||||||||||||||||||||||||||||    
T  11038679 ttgttttggtcctttccgttaattttattcaaaaaaa--cgttagggtttattttcttcatcttctccatctcaatccttcatctc 11038762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 36220655 - 36220605
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  36220655 ttaattgctattttagtaccttaactaattttttggtatcgttttggtccc 36220605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 51646026 - 51645976
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  51646026 ttaattgctattttagtcccttagctaattttttggtatcggtttggtccc 51645976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 36219405 - 36219460
Alignment:
Q  118 tatggttaattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    |||| ||||||||||||||||| |||||||||||||||  ||||||||||||||||    
T  36219405 tatgcttaattgctattttagtcccttaactaatttttgagtatcggtttggtccc 36219460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 702705 - 702655
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    |||||||||||||| || ||||||||||||||||||||||| |||||||||    
T  702705 ttaattgctattttcgtcccttaactaattttttggtatcgctttggtccc 702655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 756490 - 756540
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    |||||||||||||| || ||||||||||||||||||||||| |||||||||    
T  756490 ttaattgctattttcgtcccttaactaattttttggtatcgctttggtccc 756540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 771004 - 770954
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    |||||||||||||| || ||||||||||||||||||||||| |||||||||    
T  771004 ttaattgctattttcgtcccttaactaattttttggtatcgctttggtccc 770954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 35060508 - 35060458
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    |||||||||||||| || ||||||||||||||||||||||| |||||||||    
T  35060508 ttaattgctattttcgtcccttaactaattttttggtatcgctttggtccc 35060458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 701636 - 701686
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    |||||||||||||| || |||||||| |||||||||||||| |||||||||    
T  701636 ttaattgctattttcgtcccttaacttattttttggtatcgctttggtccc 701686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 769935 - 769985
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    |||||||||||||| || |||||||| |||||||||||||| |||||||||    
T  769935 ttaattgctattttcgtcccttaacttattttttggtatcgctttggtccc 769985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 16038278 - 16038328
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    ||||||| |||||| || ||||||||||||||||||||||| |||||||||    
T  16038278 ttaattgttattttcgtcccttaactaattttttggtatcgctttggtccc 16038328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 16039733 - 16039683
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    |||||||||||||| || ||||||||||||||||||||||| || ||||||    
T  16039733 ttaattgctatttttgtcccttaactaattttttggtatcgtttcggtccc 16039683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 35055336 - 35055386
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    ||||||| |||||| || ||||||||||||||||||||||| |||||||||    
T  35055336 ttaattgttattttcgtcccttaactaattttttggtatcgctttggtccc 35055386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 167
Target Start/End: Complemental strand, 50551468 - 50551425
Alignment:
Q  124 taattgctattttagttccttaactaattttttggtatcggttt 167  Q
    |||||| ||||||||| |||||| ||||||||||||||||||||    
T  50551468 taattgttattttagtcccttaattaattttttggtatcggttt 50551425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 757554 - 757504
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    ||||||||||||||  | |||||||| |||||||||||||| |||||||||    
T  757554 ttaattgctattttcatcccttaacttattttttggtatcgctttggtccc 757504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 123 - 308
Target Start/End: Original strand, 9311024 - 9311206
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccccataactnnnnnnnggtccgttttaatattttaacttttgttctgttac 222  Q
    ||||||||||||||||| ||||| ||||||||||||||||| |||||| |||||||||        ||| |||||  ||||||||||||||||| ||| |    
T  9311024 ttaattgctattttagtcccttatctaattttttggtatcgctttggt-cccataactaaaaaaaagtctgttttggtattttaacttttgttccgtttc 9311122  T
Q  223 atgtgttgatcatttccgttaattttattcnnnnnnnnncgcttgggtttattttcttcatcttctccatctcaatccttcatctc 308  Q
     ||| ||| || ||||||||||||||||||         || | |||||||| |||||||||||||||||||||||||||||||||    
T  9311123 ttgttttggtcctttccgttaattttattc--aaaaaaacgttagggtttatattcttcatcttctccatctcaatccttcatctc 9311206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 308
Target Start/End: Original strand, 14816573 - 14816754
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccccataactnnnnnnnggtccgttttaatattttaacttttgttctgttac 222  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||| ||||| |||        ||| |||||  ||||||||||||||||| ||| |    
T  14816573 ttaattgctattttagtcccttaactaattttttggtatcgctttggt-cccattactaaaaaaa-gtctgttttggtattttaacttttgttccgtttc 14816670  T
Q  223 atgtgttgatcatttccgttaattttattcnnnnnnnnncgcttgggtttattttcttcatcttctccatctcaatccttcatctc 308  Q
     ||| ||| |  ||||||||||||||||||         || |  |||||||||||||||||||||||||||||||||||||||||    
T  14816671 ttgttttggttctttccgttaattttattc--aaaaaaacgttaaggtttattttcttcatcttctccatctcaatccttcatctc 14816754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 308
Target Start/End: Complemental strand, 14829167 - 14828986
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccccataactnnnnnnnggtccgttttaatattttaacttttgttctgttac 222  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||| ||||| |||        ||| |||||  ||||||||||||||||| ||| |    
T  14829167 ttaattgctattttagtcccttaactaattttttggtatcgctttggt-cccattactaaaaaaa-gtctgttttggtattttaacttttgttccgtttc 14829070  T
Q  223 atgtgttgatcatttccgttaattttattcnnnnnnnnncgcttgggtttattttcttcatcttctccatctcaatccttcatctc 308  Q
     ||| ||| |  ||||||||||||||||||         || |  |||||||||||||||||||||||||||||||||||||||||    
T  14829069 ttgttttggttctttccgttaattttattc--aaaaaaacgttaaggtttattttcttcatcttctccatctcaatccttcatctc 14828986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 44633829 - 44633779
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  44633829 ttaattgctattttggttccttaactaattttttggtatcgctttggtccc 44633779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 123 - 252
Target Start/End: Complemental strand, 9312231 - 9312103
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccccataactnnnnnnnggtccgttttaatattttaacttttgttctgttac 222  Q
    ||||||||||||||||| | ||||||||||||||||||||| |||| | |||||||||        |||||||||  |||||||| ||||| ||||| ||    
T  9312231 ttaattgctattttagtcctttaactaattttttggtatcgctttgat-cccataactaaaaaaaagtccgttttggtattttaatttttgctctgtcac 9312133  T
Q  223 atgtgttgatcatttccgttaattttattc 252  Q
    |||| ||  || |||| |||||| ||||||    
T  9312132 atgttttagtcctttctgttaatattattc 9312103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 39270849 - 39270799
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    |||||||||||||| || |||||||| |||||||||||||| |||||||||    
T  39270849 ttaattgctattttcgtcccttaacttattttttggtatcgttttggtccc 39270799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 39567066 - 39567116
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    ||||||| |||||| || ||||||||||||||||||||||| |||||||||    
T  39567066 ttaattgttattttcgtcccttaactaattttttggtatcgctttggtccc 39567116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 45378603 - 45378553
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    |||||||||||||| || |||||| |||||||||||||||| |||||||||    
T  45378603 ttaattgctattttcgtcccttaaataattttttggtatcgctttggtccc 45378553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 170
Target Start/End: Complemental strand, 39568563 - 39568516
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggt 170  Q
    |||||||||||||| || |||||||||||||||| |||||| ||||||    
T  39568563 ttaattgctatttttgtcccttaactaattttttagtatcgttttggt 39568516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 157
Target Start/End: Complemental strand, 14819425 - 14819391
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttg 157  Q
    ||||||||||||||||| |||||||||||||||||    
T  14819425 ttaattgctattttagtcccttaactaattttttg 14819391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 44632709 - 44632759
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    |||||||||||||| ||  ||||| |||||||||||||||| |||||||||    
T  44632709 ttaattgctattttcgtctcttaattaattttttggtatcgttttggtccc 44632759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 123 - 226
Target Start/End: Original strand, 29744784 - 29744886
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccccataactnnnnnnnggtccgttttaatattttaacttttgttctgttac 222  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||        |||||||||  ||||||||||||||||| |||||    
T  29744784 ttaattgctattttagtcccttaactaattatttggtatcggtttggt-cccataactaaaaaaaagtccgttttggtattttaacttttgttccgttac 29744882  T
Q  223 atgt 226  Q
    ||||    
T  29744883 atgt 29744886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 123 - 226
Target Start/End: Complemental strand, 29751195 - 29751093
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccccataactnnnnnnnggtccgttttaatattttaacttttgttctgttac 222  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||        |||||||||  ||||||||||||||||| |||||    
T  29751195 ttaattgctattttagtcccttaactaattatttggtatcggtttggt-cccataactaaaaaaaagtccgttttggtattttaacttttgttccgttac 29751097  T
Q  223 atgt 226  Q
    ||||    
T  29751096 atgt 29751093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 21611918 - 21611968
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    |||||||||||||| || ||||||||||||||||||||||| |||||||||    
T  21611918 ttaattgctattttcgtcccttaactaattttttggtatcgatttggtccc 21611968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 5660246 - 5660198
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtc 171  Q
    |||||||||||||| || ||| ||||||||||||||||||| |||||||    
T  5660246 ttaattgctattttcgtccctaaactaattttttggtatcgttttggtc 5660198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 14403691 - 14403741
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    ||||||||||||||||| ||||| ||||||| ||||||||  |||||||||    
T  14403691 ttaattgctattttagtcccttacctaatttgttggtatcactttggtccc 14403741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 21282820 - 21282870
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    |||||||||||||| || |||||| ||||||||| |||||| |||||||||    
T  21282820 ttaattgctattttcgtcccttaattaatttttttgtatcgctttggtccc 21282870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 18683551 - 18683603
Alignment:
Q  121 ggttaattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    |||||| |||| ||||||||||||||||| ||  ||||||||| |||||||||    
T  18683551 ggttaaatgctcttttagttccttaactatttaattggtatcgctttggtccc 18683603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 123 - 226
Target Start/End: Original strand, 27688489 - 27688591
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccccataactnnnnnnnggtccgttttaatattttaacttttgttctgttac 222  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||        |||||||||  ||||||||||||||||| |||||    
T  27688489 ttaattgctattttagtcccttaactaattatttggtatcggtttggt-cccataactaaaaaaaagtccgttttggtattttaacttttgttccgttac 27688587  T
Q  223 atgt 226  Q
    ||||    
T  27688588 atgt 27688591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 123 - 226
Target Start/End: Complemental strand, 27695630 - 27695528
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccccataactnnnnnnnggtccgttttaatattttaacttttgttctgttac 222  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||        |||||||||  ||||||||||||||||| |||||    
T  27695630 ttaattgctattttagtcccttaactaattatttggtatcggtttggt-cccataactgaaaaaaagtccgttttggtattttaacttttgttccgttac 27695532  T
Q  223 atgt 226  Q
    ||||    
T  27695531 atgt 27695528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 123 - 308
Target Start/End: Complemental strand, 39992549 - 39992367
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccccataactnnnnnnnggtccgttttaatattttaacttttgttctgttac 222  Q
    |||||| |||||||||| ||||||||||||||||||||||  ||| ||||| |||| |        | |||||||  |||||||| |||| ||||||| |    
T  39992549 ttaattactattttagtcccttaactaattttttggtatcacttttgtccc-ataattaaaaaaaagaccgttttggtattttaatttttattctgtttc 39992451  T
Q  223 atgtgttgatcatttccgttaattttattcnnnnnnnnncgcttgggtttattttcttcatcttctccatctcaatccttcatctc 308  Q
     ||| ||| ||||||||||||||||||||          || | ||||||||||||||||||||||||||||||||||||||||||    
T  39992450 ttgttttggtcatttccgttaattttatt--aaaaaaaacgttagggtttattttcttcatcttctccatctcaatccttcatctc 39992367  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 20184451 - 20184501
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  20184451 ttaattgttattttagtcccttaactaattttttggtatcggtttggtccc 20184501  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 39991508 - 39991558
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    ||||||| ||||||||||||||||||||||||||| ||||| |||| ||||    
T  39991508 ttaattgttattttagttccttaactaattttttgatatcgttttgatccc 39991558  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 21815911 - 21815958
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggt 170  Q
    |||||||||||||| || |||||||||||||||| |||||| ||||||    
T  21815911 ttaattgctattttcgtcccttaactaattttttagtatcgctttggt 21815958  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 20185868 - 20185818
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    ||||||||||||||||| | ||| |||||||||| ||||||||||| ||||    
T  20185868 ttaattgctattttagtccattacctaatttttttgtatcggtttgatccc 20185818  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 21817455 - 21817405
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    |||||| |||||||  | ||||||||||||||||||||||| |||||||||    
T  21817455 ttaattactattttcatcccttaactaattttttggtatcgctttggtccc 21817405  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 49221510 - 49221560
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    ||||||| |||||| || |||||||||||||||||||||||| || |||||    
T  49221510 ttaattgttatttttgtcccttaactaattttttggtatcgggttagtccc 49221560  T

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Target: scaffold0394 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 226
Target Start/End: Original strand, 14273 - 14376
Alignment:
Q  123 ttaattgctattttagttccttaactaa-ttttttggtatcggtttggtccccataactnnnnnnnggtccgttttaatattttaacttttgttctgtta 221  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||        |||||||||  ||||||||||||||||| ||||    
T  14273 ttaattgctattttagtcccttaactaatttttttggtatcggtttggt-cccataactaaaaaaaagtccgttttggtattttaacttttgttccgtta 14371  T
Q  222 catgt 226  Q
    |||||    
T  14372 catgt 14376  T

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Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 36889802 - 36889752
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  36889802 ttaattgctattttagtcccttaactaattttttggtatcggtttggtccc 36889752  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 123 - 298
Target Start/End: Complemental strand, 13810633 - 13810463
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccccataactnnnnnnnggtccgttttaatattttaacttttgttctgttac 222  Q
    |||||||| ||||||||  |||||||||||||  ||||||| ||||||||| ||||||        ||||| |||  ||||||||||||||||||||| |    
T  13810633 ttaattgcaattttagtctcttaactaatttt--ggtatcgctttggtccc-ataactaaaaaaaagtccgatttggtattttaacttttgttctgtttc 13810537  T
Q  223 atgtgttgatcatttccgttaattttattcnnnnnnnnncgcttgggtttattttcttcatcttctccatctcaat 298  Q
     ||| ||| ||||||| |||||||||||||         || | ||||||||||||||||||||||||||||||||    
T  13810536 ttgttttggtcatttctgttaattttattc--aaaaaaacgttagggtttattttcttcatcttctccatctcaat 13810463  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 36888341 - 36888391
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  36888341 ttaattgctattttagtcccttagctaattttttggtatcggtttggtccc 36888391  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 7184884 - 7184934
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    |||||||||||||||||  ||||||||||||||||||||||||||| ||||    
T  7184884 ttaattgctattttagtctcttaactaattttttggtatcggtttgatccc 7184934  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 35738366 - 35738413
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggt 170  Q
    |||||| ||||||| |||||||||||||||||||||||||| ||||||    
T  35738366 ttaattactattttcgttccttaactaattttttggtatcgctttggt 35738413  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 252
Target Start/End: Original strand, 13809428 - 13809555
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccccataactnnnnnnnggtccgttttaatattttaacttttgttctgttac 222  Q
    |||||| |||||||||  ||||||||||||||||||||||| |||| |||  |||| |       | ||||||||| ||||||||||||||||| || ||    
T  13809428 ttaatttctattttaggcccttaactaattttttggtatcgctttgatcct-ataattaaaaaaag-tccgttttagtattttaacttttgttccgtcac 13809525  T
Q  223 atgtgttgatcatttccgttaattttattc 252  Q
    |||| ||  || ||||||||||| ||||||    
T  13809526 atgttttagtcctttccgttaatattattc 13809555  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 23991279 - 23991316
Alignment:
Q  133 ttttagttccttaactaattttttggtatcggtttggt 170  Q
    ||||||||||||||||| || |||||||||||||||||    
T  23991279 ttttagttccttaactatttatttggtatcggtttggt 23991316  T

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Target: scaffold0194 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 19300 - 19250
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    ||||||| || |||||||||||||||||||||||| |||||||||||||||    
T  19300 ttaattgttactttagttccttaactaattttttgatatcggtttggtccc 19250  T

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Target: scaffold0194; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 18071 - 18119
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtc 171  Q
    |||||| |||||||||| |||||||||||||||  ||||||||||||||    
T  18071 ttaattactattttagtcccttaactaatttttgagtatcggtttggtc 18119  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 19718945 - 19718900
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttg 168  Q
    ||||||||||||||||| | ||||||||||||||||||||| ||||    
T  19718945 ttaattgctattttagtcctttaactaattttttggtatcgctttg 19718900  T

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Target: scaffold0031 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 123427 - 123477
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    |||||||||||||| || ||||||||||||| ||||||| | |||||||||    
T  123427 ttaattgctattttcgtcccttaactaatttcttggtattgctttggtccc 123477  T

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Target: scaffold0031; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 134303 - 134353
Alignment:
Q  123 ttaattgctattttagttccttaactaattttttggtatcggtttggtccc 173  Q
    |||||||||||||| || ||||||||||||| ||||||| | |||||||||    
T  134303 ttaattgctattttcgtcccttaactaatttcttggtattgctttggtccc 134353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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