View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16516_low_23 (Length: 314)
Name: NF16516_low_23
Description: NF16516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16516_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 116; Significance: 5e-59; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 45182019 - 45182159
Alignment:
| Q |
1 |
aaaaacttgtgatgatcaggagtaaggtcattatttgccttgatgacttgatgtaaatcagagtccatcaactcaaaaacaagataaatatctttgaact |
100 |
Q |
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| T |
45182019 |
aaaaacttgtgatgatcaggagtaaggtcattatttgccttg--------atgtaaatcagagtccatcaactcaaaaacaagataaatatctttgaact |
45182110 |
T |
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| Q |
101 |
cacgaagaggagaaggaggaagcataatatgcgtaatttgtactatatc |
149 |
Q |
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| T |
45182111 |
cacgacgaggagaaggaggaagcataatatgcgtaatttgtactatatc |
45182159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 210 - 299
Target Start/End: Original strand, 45182163 - 45182252
Alignment:
| Q |
210 |
atggcatctctgttgtatgctcaaaaacattgttgattttcttgatagcaactttttgattagtaagagtgtcgattgcagagctgacaa |
299 |
Q |
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| T |
45182163 |
atggcatctctgttgtatgctcaaaaacattgttgattttcttgatagcaacttttttattagtaagagtgtcgattgcagagctgacaa |
45182252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 45175223 - 45175477
Alignment:
| Q |
18 |
aggagtaaggtcattatttgccttgatgacttgatgtaaatcagagtccatcaactcaaaaacaagataaatatctttgaactcacgaagaggagaagga |
117 |
Q |
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| T |
45175223 |
aggagtaagatcatgatttgccttaattacttgatgtagatcagattccatcaactcaaagacaacatagatatccctaaactcac---ggcgtgaagga |
45175319 |
T |
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| Q |
118 |
ggaagcataatatgcgtaatttgtactatatcaggatgatgttggacttggagcaagcgcaggagcttgatttctcttaggatccgtatggcatggcatc |
217 |
Q |
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| T |
45175320 |
ggaagcataatatgcctaatttcaacaatatcaggat-------gcct--gagcaagcgcaagagcttgatttctcttaggatacgggtggc-------g |
45175403 |
T |
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| Q |
218 |
tctgttgtatgctcaaaaacattgttgattttcttgatagcaactttttgattagtaagagtgtcgattgcaga |
291 |
Q |
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| T |
45175404 |
tcagatacatgctcaaaaacatggttaattttcttgatagcaactttttggccagtatgagtgtcaattgcaga |
45175477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 48725084 - 48725013
Alignment:
| Q |
27 |
gtcattatttgccttgatgacttgatgtaaatcagagtccatcaactcaaaaacaagataaatatctttgaa |
98 |
Q |
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| T |
48725084 |
gtcatcatttgctttgatgacttgatgtaaatctgattccataagttcaaaaacaacatatatatctttgaa |
48725013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 7253146 - 7253216
Alignment:
| Q |
28 |
tcattatttgccttgatgacttgatgtaaatcagagtccatcaactcaaaaacaagataaatatctttgaa |
98 |
Q |
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| T |
7253146 |
tcatcatttgctttgatgacctgatgtaaatcagattccatgagttcaaatacaacatatatatctttgaa |
7253216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 30813349 - 30813281
Alignment:
| Q |
27 |
gtcattatttgccttgatgacttgatgtaaatcagagtccatcaactcaaaaacaagataaatatcttt |
95 |
Q |
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| T |
30813349 |
gtcatcattagctttgatgacttgatggagatcagactccatgagctcaaagacaacataaatatcttt |
30813281 |
T |
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