View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16516_low_25 (Length: 285)
Name: NF16516_low_25
Description: NF16516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16516_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 6 - 268
Target Start/End: Original strand, 37218488 - 37218750
Alignment:
| Q |
6 |
aggagtaagagttcaaaatatattccatctcattccattctatattatgttatatatacggatctacaatttatctctaatatttgcagtggtcatcaaa |
105 |
Q |
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| T |
37218488 |
aggagtaagagttcaaaatatattccatctcattccattctatattatgttatatatacggatctacaatttatctctaatatttgcagtggtcatcaaa |
37218587 |
T |
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| Q |
106 |
ttatttgcagtcatgatcaaaatgttgttaccttagacgtcaatgctgccaaagatttattacattcatctgtttacaattatcttgatgtgaggtaatc |
205 |
Q |
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| T |
37218588 |
ttatttgcagtcatgatcaaaatgttgttaccttagatgtcaatgctgccaaagatttattacattcatctggttacaattatcttgatgtgaggtaatc |
37218687 |
T |
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| Q |
206 |
aacaaaggattgagtttctccaatttccttctttatctgtaattttcaaaaggaatacctaac |
268 |
Q |
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| T |
37218688 |
aacaaaggatcgagtttctccaatttccttctttatctgtaattttcaaaaggaatacctaac |
37218750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 121 - 254
Target Start/End: Original strand, 5409596 - 5409729
Alignment:
| Q |
121 |
atcaaaatgttgttaccttagacgtcaatgctgccaaagatttattacattcatctgtttacaattatcttgatgtgaggtaatcaacaaaggattgagt |
220 |
Q |
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| T |
5409596 |
atcaaaatgttgttaccttagatgtccatgctgccaaagatctattacattcatctggttacaattatcttgatgtgaggtaattaacaaaggaatgaga |
5409695 |
T |
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| Q |
221 |
ttctccaatttccttctttatctgtaattttcaa |
254 |
Q |
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| T |
5409696 |
ttctccaatttccttcttcatttttaattttcaa |
5409729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 121 - 214
Target Start/End: Complemental strand, 24666756 - 24666663
Alignment:
| Q |
121 |
atcaaaatgttgttaccttagacgtcaatgctgccaaagatttattacattcatctgtttacaattatcttgatgtgaggtaatcaacaaagga |
214 |
Q |
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||||| |||||||||||||||| ||| ||||| |||||||| | || ||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
24666756 |
atcaagatgttgttaccttagatgtccatgctaccaaagatctgctagattcatctggttacaattatcttgatgtgaggtaattaacaaagga |
24666663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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