View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16516_low_28 (Length: 250)
Name: NF16516_low_28
Description: NF16516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16516_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 3362225 - 3362463
Alignment:
| Q |
1 |
tttttcgttcatctacctcacatacaaagcctagagattcatcacaattttttagaggtataatgctcgagcatctgaatttagagcttgactataagat |
100 |
Q |
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| T |
3362225 |
tttttcgttcatctacctcacatacaaagcctagagattcatcactattttttagaggtataatgctcttgcatctgaatgtagagcttgactataagat |
3362324 |
T |
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| Q |
101 |
tgacatacctaatgttgttgaagtttccccacccctcaaaccccctaaaaatttcaattatgccaaaatctgatttatgcacctctgcaattgtaagtgt |
200 |
Q |
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| T |
3362325 |
tgacatacctaatgttgttgaagtttccccacccctcaaaccccctacaaatttaaattatgccaaaatcttatgtatgcaactcttcaattgtaagtgt |
3362424 |
T |
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| Q |
201 |
aaaaacaaattatattctgatttagagttgttcttctgt |
239 |
Q |
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| T |
3362425 |
aaaaacaaattatattctgatttagagttgttcttctgt |
3362463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 3379260 - 3379325
Alignment:
| Q |
1 |
tttttcgttcatctacctcacatacaaagcctagagattcatcacaattttttagaggtataatgc |
66 |
Q |
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||||||||||||| ||||||||| || |||||||||||| | | |||||||| ||||||||||| |
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| T |
3379260 |
tttttcgttcatcgacctcacatgcagagcctagagattggtaattattttttaaaggtataatgc |
3379325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 4334515 - 4334478
Alignment:
| Q |
1 |
tttttcgttcatctacctcacatacaaagcctagagat |
38 |
Q |
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| T |
4334515 |
tttttcgatcatcgacctcacatacaaagcctagagat |
4334478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 80
Target Start/End: Original strand, 20953512 - 20953590
Alignment:
| Q |
2 |
ttttcgttcatctacctcacatacaaagcctagagattcatcacaattttttagaggtataatgctcgagcatctgaat |
80 |
Q |
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|||||| |||||||||||||||||||||||||| |||| | |||||||||| ||||||| ||||| | ||||||||| |
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| T |
20953512 |
ttttcgatcatctacctcacatacaaagcctagtgattgaaagcaattttttaaaggtatagtgctcaaacatctgaat |
20953590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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