View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16516_low_3 (Length: 531)
Name: NF16516_low_3
Description: NF16516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16516_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 11 - 513
Target Start/End: Original strand, 40834920 - 40835426
Alignment:
| Q |
11 |
caaaggcaatgatgcagtaaatgtttcttgcccaatgtaacttgataaattaatggtagcttcgccaagggtcccaaacctgggagatccctgcattatc |
110 |
Q |
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| T |
40834920 |
caaaggcaatgatgcagtaaatgtttcttgcccaatgtaacttgataaattaatggtagcttcgccaagggtcccaaacctgggagatccctgcattatc |
40835019 |
T |
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| Q |
111 |
acaaagccatacga-----ctcatttcagaatatatttagtgttccttctatttttgaagttgnnnnnnnnnnnnnnataaaagaaaatgtgaagtttta |
205 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
40835020 |
acaaagccatacgatacgactcatttcagaatatatttagtgttccttctatttttgaagttgttttttctttttt-acaaaagaaaatgtgaagtttta |
40835118 |
T |
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| Q |
206 |
tgaacaaaaacaaaccattgctacaagaagcttaaggaggcaggcttgattatcttgtagagaataatcagaaatccaaatggtacttaacatagagtct |
305 |
Q |
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| T |
40835119 |
tgaacaaaaacaaaccattgctacaagaagcttaagaaggcaggcttgattatcttgtagagaataatcagaaatccaaatggtacttaacatagagtct |
40835218 |
T |
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| Q |
306 |
tcccaatcacactctccattttttactaatgctttgccagacttggctatggtttccccagtttctatacaaataatagaaacaaaaagctggttccacc |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40835219 |
tcccaatcacactctccattttttactaatgctttgccagacttggctatggtttccccagtttctatacaaataatagaaacaaaaagctggttccacc |
40835318 |
T |
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| Q |
406 |
ctttttcaatctgcatcatcataaataaataaattgtatagacaatatgattactaaatttgaaatgtgacaaaatcacaatcatcacatccagaaaaaa |
505 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40835319 |
ctttttcaatctgcatcatcataaataaataaattgtatagacaatatgattactaaatttgaaatgtgacaaaatcacaatcatcatatccagaaaaaa |
40835418 |
T |
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| Q |
506 |
gaaacatt |
513 |
Q |
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|||||||| |
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| T |
40835419 |
gaaacatt |
40835426 |
T |
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