View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16516_low_30 (Length: 235)
Name: NF16516_low_30
Description: NF16516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16516_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 77 - 217
Target Start/End: Original strand, 32615342 - 32615482
Alignment:
| Q |
77 |
tcattacccaaattccttattcaagctgttaggtgcagctgtagacgccttcccaccaccatatttcgcaacaaaatcatccttcacacgctccagaaaa |
176 |
Q |
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| T |
32615342 |
tcattacccaaattccttattcaagctgttaggtgcagctgtagacgccttcccaccaccatatttcgcaacaaaatcatccttcacacgctccagaaaa |
32615441 |
T |
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| Q |
177 |
gccaccggcacttgtcttccaacagtttcatccgcaacaac |
217 |
Q |
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| T |
32615442 |
gccaccggcacttgtcttccaacagtttcatccgcaacaac |
32615482 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 217
Target Start/End: Complemental strand, 10692435 - 10692331
Alignment:
| Q |
113 |
agctgtagacgccttcccaccaccatatttcgcaacaaaatcatccttcacacgctccagaaaagccaccggcacttgtcttccaacagtttcatccgca |
212 |
Q |
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||||||||| ||||| ||||||||||||| | |||||||||||||| |||||||| ||||| |||| || || ||||||||| |||||||| ||| |
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| T |
10692435 |
agctgtagaagccttttcaccaccatattttgacacaaaatcatccttgacacgctctagaaaggccatgggaacctgtcttccagttgtttcatctgca |
10692336 |
T |
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| Q |
213 |
acaac |
217 |
Q |
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||||| |
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| T |
10692335 |
acaac |
10692331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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