View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16516_low_31 (Length: 228)
Name: NF16516_low_31
Description: NF16516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16516_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 12053822 - 12054025
Alignment:
| Q |
18 |
attatcaattgtccttttgatgtaccttatatttttcttagaagctattagatgacatgttttaagttgcttcatgaacctacttactaaaccaaccctt |
117 |
Q |
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| T |
12053822 |
attatcaattgtccttttgatgtaccttatatttttcttagaagctattagatgacatgttttaagttgcttcatgaacctacttactaaaccaactctt |
12053921 |
T |
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| Q |
118 |
tgacatatatatggccttgtattgcacacatatatctcagagagccaatattgatttgcttgtgcgtagttgcattcgtaagctcatcatttgtatctct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
12053922 |
tgacatatatatggccttgtattgcacacatatatctcagagagccaatattgatttgcttgtgcgtagttgcattcgtaagctcatcatttgtatcttt |
12054021 |
T |
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| Q |
218 |
gctc |
221 |
Q |
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|||| |
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| T |
12054022 |
gctc |
12054025 |
T |
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