View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16516_low_36 (Length: 212)
Name: NF16516_low_36
Description: NF16516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16516_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 40730016 - 40730187
Alignment:
| Q |
19 |
gtaaggatttttgaggaaaccgtcggtgtaacaacaggtgcagttactaggttttcaataataagaattgggataaaaagggagttgggcgtgcactgct |
118 |
Q |
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| T |
40730016 |
gtaaggatttttgaggaaaccgtcggtgtaata---ggtgcagttactaggttttcaataataaggcttgggataaaaagggagttgg-cgtgtactgct |
40730111 |
T |
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| Q |
119 |
aatgggatattttcaatctggaatgggaagctcttggaacgttttcctatttccttggtctgatatggtttaagta |
194 |
Q |
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| T |
40730112 |
aatgggatattttcaatatggaatgggaagttcttggaacgttttcctatttccttgatctgatctggtttaagta |
40730187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 22 - 182
Target Start/End: Complemental strand, 25672964 - 25672805
Alignment:
| Q |
22 |
aggatttttgaggaaaccgtcggtgtaacaacaggtgcagttactaggttttcaataataa--gaattgggataaaaagggagttgggcgtgcactgcta |
119 |
Q |
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| T |
25672964 |
aggatttttgaggaaaccgtccgtgtaaca---ggtgcagttactaggttttcaataaaaaaagacttgggataaaaagggagttgtgcgtgtactagca |
25672868 |
T |
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| Q |
120 |
atgggatattttcaatctggaatgggaagctcttggaacgttttcctatttccttggtctgat |
182 |
Q |
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| T |
25672867 |
atgggatattttcaatctgacatgggaagctcttggaacgttttcctatttccttggtctgat |
25672805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 38985024 - 38985194
Alignment:
| Q |
21 |
aaggatttttgaggaaaccgtcggtgtaacaacaggtgcagttactaggttttcaataataa-gaattgggataaaaag---ggagttgggcgtgcactg |
116 |
Q |
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| T |
38985024 |
aaggatttttgaggaaaccgtcaaggtaaca----gtgcagttactaggtttccaataagaaagacttgggataaaaaaaaaggagttgggcgtgtaatg |
38985119 |
T |
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| Q |
117 |
ctaatgggatattttcaatctggaatgggaagctcttggaacgttttcctatttccttggtctgatatggtttaa |
191 |
Q |
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| T |
38985120 |
ctattgggatattttcaatctgacatgggaagctcttggaacgttttcctatttccttggtctgatctggtttaa |
38985194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 11650893 - 11650942
Alignment:
| Q |
141 |
atgggaagctcttggaacgttttcctatttccttggtctgatatggttta |
190 |
Q |
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| T |
11650893 |
atgggaagctcttggaacgttttcctgtttccttggtatgatttggttta |
11650942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 11650829 - 11650891
Alignment:
| Q |
19 |
gtaaggatttttgaggaaaccgtcggtgtaacaacaggtgcagttactaggttttcaataataaga |
84 |
Q |
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||||||||| | |||||||||||| |||||||| |||||||||||||||||||||||| |||| |
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| T |
11650829 |
gtaaggattctagaggaaaccgtccgtgtaacat---gtgcagttactaggttttcaataaaaaga |
11650891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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