View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16516_low_4 (Length: 527)
Name: NF16516_low_4
Description: NF16516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16516_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 482; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Complemental strand, 32177611 - 32177098
Alignment:
| Q |
1 |
ttcttcttccatctccgttgacccttttttccttcgtgtccaaacccttcgcaactccacccaccttcttccttcattgatctcttcactttcaccaccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32177611 |
ttcttcttccatctccgttgacccttttttccttcgagtccaaacccttcgcaactccacccaccttcttccttcattgatctcttcactttcaccaccc |
32177512 |
T |
|
| Q |
101 |
attactgtttttatctctgacatacttcttttt-cccctctcaataaaatcactcaaaaactttctctccctaattacatcttgaacacttcttcttctg |
199 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32177511 |
atcactgtttttatctctgacatacttcttttttcccctctcaataaaatcactcaaaaactttctctccctaattacatcttgaacacttcttcttctg |
32177412 |
T |
|
| Q |
200 |
ctatgttctccttattctctcatttccctactcttactcaatccttatccttacaagaacaagaatatgatgcttctgatggggttctagttccaggcat |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32177411 |
ctatgttctccttattctctcatttccctactcttgctcaatccttatcctcacaagaacaagaatatgatgcttctgatggggttctagttccaggcat |
32177312 |
T |
|
| Q |
300 |
tccattttcacctttaccatattcatctatcccaccatttcttctccaacctacttctatattgagaaaccttgcgatggaagatagtcctaagctcgtt |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32177311 |
tccattttcacctttaccatattcatctatcccaccatttcttctccaacctacttctatattgagaaaccttgcgatggaagatagtcctaagctcgtt |
32177212 |
T |
|
| Q |
400 |
aacttacacggtgtttttgccaacacttttgaagcacttgagtctcattcactagaggctcttaatagtggaaaagttgtcaaaaatatgcctcctgtat |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
32177211 |
tacttacacggtgtttttgccaacacttttgaagcacttgagtctcattcactagaggctcttaatagtggaaaagttgtcaaaaatatgcctcctgttt |
32177112 |
T |
|
| Q |
500 |
atgcagttggtcct |
513 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
32177111 |
atgcagttggtcct |
32177098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 32184762 - 32184536
Alignment:
| Q |
17 |
gttgacccttttttccttcgtgtccaaacccttcgcaactccacccaccttcttccttcattgatctcttcactttcaccacccattactgtttttatct |
116 |
Q |
| |
|
||||| |||||||||| | | || |||||||||||| |||||||| ||||||||||| | |||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
32184762 |
gttgatccttttttccatagagttcaaacccttcgcgactccaccaaccttcttcctcctttgatctcttcactttcaccacccatcactgttttcatct |
32184663 |
T |
|
| Q |
117 |
ctgacatacttctt-tttcccctctcaataaaatcactcaaaaactttctctccctaattacatcttgaacacttcttcttctgctatgttctccttatt |
215 |
Q |
| |
|
|||| || | ||| |||| ||||||| | |||||||||| |||||||||| ||||| || | |||| |||||||| || | ||||||||||| || |
|
|
| T |
32184662 |
ctgatatcttccttctttcacctctcatttcaatcactcaacaactttctctacctaactataccttgtttacttcttcagcttccatgttctccttctt |
32184563 |
T |
|
| Q |
216 |
ctctcatttccctactcttactcaatc |
242 |
Q |
| |
|
||||| |||||||||||| ||||||| |
|
|
| T |
32184562 |
ttctcacttccctactcttgctcaatc |
32184536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 288 - 513
Target Start/End: Complemental strand, 32184499 - 32184277
Alignment:
| Q |
288 |
agttccaggcattccattttcacctttaccatattcatctatcccaccatttcttctccaacctacttctatattgagaaaccttgcgatggaagatagt |
387 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||||| ||||| || | ||||| ||||| ||||| ||| ||||||||||||| |
|
|
| T |
32184499 |
agttccaggtattgcattttcacctttaccatattcatctatcccaccgattcttttcaagcctacc---atattcagaaatcttatgatggaagatagt |
32184403 |
T |
|
| Q |
388 |
cctaagctcgttaacttacacggtgtttttgccaacacttttgaagcacttgagtctcattcactagaggctcttaatagtggaaaagttgtcaaaaata |
487 |
Q |
| |
|
||||| || || |||| ||||||||| |||||| ||| |||||||||| |||||||||||| | |||||||||| |||| ||||||| ||| | |
|
|
| T |
32184402 |
cctaacctaacaaaactacaaggtgtttttctcaacacctttaaagcacttgaatctcattcactacaagctcttaataatggagaagttgttaaaggaa |
32184303 |
T |
|
| Q |
488 |
tgcctcctgtatatgcagttggtcct |
513 |
Q |
| |
|
|||||||||| ||||| ||||||||| |
|
|
| T |
32184302 |
tgcctcctgtttatgctgttggtcct |
32184277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University