View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16516_low_5 (Length: 527)
Name: NF16516_low_5
Description: NF16516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16516_low_5 |
 | |
|
| [»] scaffold0054 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 121; Significance: 9e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 312 - 510
Target Start/End: Complemental strand, 13796269 - 13796082
Alignment:
| Q |
312 |
gacaaacactttgattcaatcatttaaactaaattaaactnnnnnnnnncgtagttatcagttaaagggagcacacggcatgacattttatatgatttct |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||| ||| |||||||| |
|
|
| T |
13796269 |
gacaaacactttgattcaatcatttaaactaaaaaaaac-----------gtagttatcagttaaagggagcacagggcatgacattgtatttgatttct |
13796181 |
T |
|
| Q |
412 |
atacttaaaaaatggcacaacaacccctatgcttttagtttgaaaaaggtgataaaatttggtcttgcataataactaccattacttttcttccaaagt |
510 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
13796180 |
atacttaaaaaaaggcacaacaaccccaatgcttttagtttgaaaaaggtgataaaatttggtcttgtataatgactaccattacttttctttcaaagt |
13796082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 312 - 510
Target Start/End: Complemental strand, 27966 - 27769
Alignment:
| Q |
312 |
gacaaacactttgattcaatcatttaaactaaattaaactnnnnnnnnncgtagttatcagttaaagggagcacacggcatgacattttatatgatttct |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||| ||| |||||||| |
|
|
| T |
27966 |
gacaaacactttgattcaatcatttaaactaaattaaactaaaaaaaa-cgtagtcatcagttaaagggagcacggggcatgacattgtatttgatttct |
27868 |
T |
|
| Q |
412 |
atacttaaaaaatggcacaacaacccctatgcttttagtttgaaaaaggtgataaaatttggtcttgcataataactaccattacttttcttccaaagt |
510 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| |||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
27867 |
atacttaaaaaaaggcacaacaaccccaatgcgtttagtttgaaaaaggtgataaaaattggtcttgtataatgactaccattacttttctttcaaagt |
27769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 419 - 495
Target Start/End: Complemental strand, 35431034 - 35430959
Alignment:
| Q |
419 |
aaaaatggcacaacaacccctatgcttttagtttgaaaaaggtgataaaatttggtcttgcataataactaccatta |
495 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||| |||| ||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
35431034 |
aaaaatggcacaacaaccccaatgattttagtttgtaaaatgtgat-aaatttggtcttgcataatgactaccatta |
35430959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 267 - 331
Target Start/End: Complemental strand, 47287716 - 47287652
Alignment:
| Q |
267 |
ataccaaaaaacaacgattaacaatcatgcctctatgcatggtaagacaaacactttgattcaat |
331 |
Q |
| |
|
|||| ||||| ||||||||||||||||| |||||||||||||| |||||||||||||| |||||| |
|
|
| T |
47287716 |
atactaaaaaccaacgattaacaatcatacctctatgcatggtcagacaaacactttgcttcaat |
47287652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 499
Target Start/End: Complemental strand, 27366530 - 27366455
Alignment:
| Q |
424 |
tggcacaacaacccctatgcttttagtttgaaaaaggtgataaaatttggtcttgcataataactaccattacttt |
499 |
Q |
| |
|
||||| ||||| |||||| ||||| |||| |||| ||||||||||||||| |||| |||| ||||||||||||| |
|
|
| T |
27366530 |
tggcataacaatccctattattttactttgtaaaatgtgataaaatttggttttgcgtaatgtctaccattacttt |
27366455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 499
Target Start/End: Complemental strand, 27456877 - 27456802
Alignment:
| Q |
424 |
tggcacaacaacccctatgcttttagtttgaaaaaggtgataaaatttggtcttgcataataactaccattacttt |
499 |
Q |
| |
|
||||| ||||| |||||| ||||| |||| |||| ||||||||||||||| |||| |||| ||||||||||||| |
|
|
| T |
27456877 |
tggcataacaatccctattattttactttgtaaaatgtgataaaatttggttttgcgtaatgtctaccattacttt |
27456802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 495
Target Start/End: Original strand, 23121148 - 23121276
Alignment:
| Q |
368 |
atcagttaaagggagcacacggcatgacattttatatgatttctatacttaaaaaatg-gcacaacaacccctatgcttttagtttgaaaaaggtgataa |
466 |
Q |
| |
|
|||| |||||||||||||| | |||||| | |||| ||||||| || |||||||| ||| ||||| ||| || ||||| ||| ||||| ||||||| |
|
|
| T |
23121148 |
atcaattaaagggagcacatgacatgacgatgaatattatttctacacataaaaaattagcataacaatcccaattattttactttcaaaaatgtgataa |
23121247 |
T |
|
| Q |
467 |
aatttggtcttgcataataactaccatta |
495 |
Q |
| |
|
|||||||| |||| |||| ||||| |||| |
|
|
| T |
23121248 |
aatttggttttgcctaatgactacaatta |
23121276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University