View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16516_low_7 (Length: 493)
Name: NF16516_low_7
Description: NF16516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16516_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Complemental strand, 5318881 - 5318407
Alignment:
| Q |
1 |
ttagtgacaggcagtggcagcagtcaggagggggaaggttttgaaggtgcatacaagaaggtagaggttgctggaaggagttcaattatttgatacagat |
100 |
Q |
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| T |
5318881 |
ttagtgacaggcagtggcagcagtcaggagggggaaggttttgaaggtgcatacaagaaggtagaggttgctggaaggagttcaattatttgatacagat |
5318782 |
T |
|
| Q |
101 |
gggaggaactgtagttcagtgttaaataacggttatggcagtgccatcgcaatatatcatagcggtgtttgaatcaattgctattgttccacaatatgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5318781 |
gggaggaactgtagttcagtgttaaataacggttatagcggtgccatcgcaatatatcatagcggtgtttgaatcaattgctattgttccacaatatgat |
5318682 |
T |
|
| Q |
201 |
atttggtactattgtcaaataatgggtatagcagcgctatgacattatttggtaccattttctgcagttcgtgattgataacaattaactacttaagcag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5318681 |
atttggtactattgtcaaataatgggtatagcagcgctatgacattatttggtaccattttctgcagttcgtgattgataacaattaactacttaagcag |
5318582 |
T |
|
| Q |
301 |
tttctttaacagttagaaggatcagtttgattaattaaggtacaaagtcattgttgcaagatggtactgtatcggatctaagtaggattcgagaacagaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5318581 |
tttctttaacagttagaaggatcagtttgattaattaaggtacaaagtcatagttgcaagatggtactgtataggatctaagtaggattcgagaacagaa |
5318482 |
T |
|
| Q |
401 |
acggatcccgttnnnnnnnntacaggaaagtagttgtgccgtgtaataaggaaattttcccttcgaagtacatat |
475 |
Q |
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|||||||||||| ||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
5318481 |
acggatcccgttaaaaaaaataccggaaagtagttctgctgtgtaataaggaaattttcccttcgaagtacatat |
5318407 |
T |
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