View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16516_low_8 (Length: 458)
Name: NF16516_low_8
Description: NF16516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16516_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 42 - 305
Target Start/End: Original strand, 27219651 - 27219913
Alignment:
| Q |
42 |
atgctcacgagactatcacaaggccacattaatatgcacctaaatatctttacaaatatttacatgatgagatattattcaatgtacatttttaatagag |
141 |
Q |
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| T |
27219651 |
atgctcacgggactaccacaaggccacattaatatgtacctaaatatctttacaaatatttacatgatgagatattattcaatgtacatatttaatagag |
27219750 |
T |
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| Q |
142 |
ttttacactgttgagtatgttcaaattaaatccttacactaaattcaattcaatccgtctacctatgaaatgttcataccgacaccagacatgaaattaa |
241 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27219751 |
ttttacactgttgagtatgtacaaattaaatccttacactaaattcaattcagt-cgtctacctatgaaatgttcataccgacaccagacatgaaattaa |
27219849 |
T |
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| Q |
242 |
tacaagtaataatttgaaaacataaaagtgattgaatgtaactatatatgtgtgtgagtgtcat |
305 |
Q |
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| T |
27219850 |
tacaagtaacaatttgaaaacataaaagtgattgaatgtaaccatatgtgtgtgtgagtgtcat |
27219913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 266 - 446
Target Start/End: Original strand, 27219914 - 27220094
Alignment:
| Q |
266 |
aaagtgattgaatgtaactatatatgtgtgtgagtgtcatctatagatacatctcagacaccagacacacttttaatttgtttaatctaaaatagtttac |
365 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
27219914 |
aaagtgattgaatgtaaccatatgtgtgtgtgagtgtcatctatagatacatgtcagacaccagacacgcctttaatttgtttaatctaaaatagtttac |
27220013 |
T |
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| Q |
366 |
tacaactattataatatataacattcaattcatacataccataggttttgctcttttgatagcttgtgcatcccttcttct |
446 |
Q |
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| T |
27220014 |
tacaactattataatatataacattcaattcatacataccataggttttgctcttttgatagcctgtgcatcccttcttct |
27220094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 58 - 192
Target Start/End: Original strand, 27217018 - 27217153
Alignment:
| Q |
58 |
cacaaggccacattaatatgcacctaaatatctttacaaatatttacatgatgagatattattcaatgtacatttttaatagagttttacactg-ttgag |
156 |
Q |
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||||||||||| ||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||| | ||| |
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| T |
27217018 |
cacaaggccactttattatgttcctaaatatctccacaaatatttacatgatgagatattattcaatgtacattgtaaatacagttttacactgatcgag |
27217117 |
T |
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| Q |
157 |
tatgttcaaattaaatccttacactaaattcaattc |
192 |
Q |
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| T |
27217118 |
tatgtacaaattaaatccttacactaaattcaattc |
27217153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 191
Target Start/End: Original strand, 24047803 - 24047831
Alignment:
| Q |
163 |
caaattaaatccttacactaaattcaatt |
191 |
Q |
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| T |
24047803 |
caaattaaatccttacactaaattcaatt |
24047831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 190
Target Start/End: Original strand, 37580461 - 37580592
Alignment:
| Q |
61 |
aaggccacattaatatgcacctaaatatctttacaaatatttacatgatgagatattattcaatgtacatttttaatagagttttacactg-ttgagtat |
159 |
Q |
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|||||||| ||| ||||| ||| |||||| |||||||||||||| |||||||||| ||| || ||||| | || | |||||||||||| |||||||| |
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| T |
37580461 |
aaggccactttattatgctcctttatatctctacaaatatttacacgatgagatatgatttgatatacatataaaagacagttttacactgattgagtat |
37580560 |
T |
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| Q |
160 |
gttcaaattaaat-ccttacactaaattcaat |
190 |
Q |
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| T |
37580561 |
atacaaattaaatcccctacactaaattcaat |
37580592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 283
Target Start/End: Complemental strand, 8013891 - 8013854
Alignment:
| Q |
246 |
agtaataatttgaaaacataaaagtgattgaatgtaac |
283 |
Q |
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| T |
8013891 |
agtaataatttgaaaaaatataagtgattgaatgtaac |
8013854 |
T |
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