View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16516_low_9 (Length: 456)
Name: NF16516_low_9
Description: NF16516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16516_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 7 - 438
Target Start/End: Original strand, 26776033 - 26776463
Alignment:
| Q |
7 |
ggagcagagagcagaataaattgtttgaatatgcattggccaattagcctgacgatgttgtggatcgatgggagaagattgcggccggtgtgcctgggaa |
106 |
Q |
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| T |
26776033 |
ggagcagcgagcagaataaattgtttgaatatgcattggccaattatcctgacgatgttgtggatcgatgggagaagattgcggccggtgtgcctgggaa |
26776132 |
T |
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| Q |
107 |
atctttggaacaaattaaacatcactatgaggttttgatagatgatatccacaacattgaatctggttttgtgcctccaccagattatgattctttttca |
206 |
Q |
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| T |
26776133 |
aactttggaacaaattaaacatcactatgaggttttggtagatgatattcacaacattgaatctggttttgtgcctctaccagattatgattctttttca |
26776232 |
T |
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| Q |
207 |
aactcaacaaagtgtactattgtcaaaaagggaattaaggcttccggttcttatcattggacagaagatgaacacaggtctgtttatctttgctttgctt |
306 |
Q |
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| T |
26776233 |
aactcaacaaagtgtactattgttaaaaagggaactaaggcttccggttcttatcattggacagaagatgaacacaggtctgtttatcttt-----gctt |
26776327 |
T |
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| Q |
307 |
tgctttggaa----atttgtttttagattgttattatttacaacttacatgcatggctgttaataacataataatgataagatactaattaaggtgaagc |
402 |
Q |
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| T |
26776328 |
tgctttggtaacttaattgtttttagattgttgttatttacaacttacattcatggctgttaataacataataatgataagatactaattaaggtgaagc |
26776427 |
T |
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| Q |
403 |
tttcggtcttttggtgttggctggagaccttggagt |
438 |
Q |
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| T |
26776428 |
tttcagtctttaggtgttggctggagaccttggagt |
26776463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 30 - 208
Target Start/End: Complemental strand, 26556619 - 26556441
Alignment:
| Q |
30 |
tttgaatatgcattggccaattagcctgacgatgttgtggatcgatgggagaagattgcggccggtgtgcctgggaaatctttggaacaaattaaacatc |
129 |
Q |
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|||||| || ||||||| ||||| || || || | |||||||||||||||||| |||||||| | |||||| |||||| |||| ||| | ||||||| || |
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| T |
26556619 |
tttgaaaatacattggcgaattatcccgaggacgctgtggatcgatgggagaaaattgcggctgatgtgcccgggaaaactttagaagagattaaacgtc |
26556520 |
T |
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| Q |
130 |
actatgaggttttgatagatgatatccacaacattgaatctggttttgtgcctccaccagattatgattctttttcaaa |
208 |
Q |
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| T |
26556519 |
actatgtggttttgtttgatgatatcaaccacattgaatctggttttgtgcctctgccagattatgattctttttcaaa |
26556441 |
T |
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