View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16517_high_5 (Length: 401)
Name: NF16517_high_5
Description: NF16517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16517_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 3 - 290
Target Start/End: Complemental strand, 49598414 - 49598126
Alignment:
| Q |
3 |
cataggaaaaatatttagaccaattagttatatagtgtgagcttataaacatgtgtattctttgcaccacaactaagtgtatcagatgataggaatagga |
102 |
Q |
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| T |
49598414 |
cataggaaaaatatttagaccaattagttatatagtgtgagcttataaacgtgtgtattctttgcaccacaactaagtgtatcagatgataggaatagga |
49598315 |
T |
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| Q |
103 |
ttacttagttatggtatgaagaggttaagtgctattgtttctcacctacttcaaatacctgtatgatctgcatttgagtaacaccatacaagacacgtga |
202 |
Q |
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| T |
49598314 |
ttacttagttatggtatgaagaggttaagtgctattgtttctcacctacttcaaatacctgtatgatctgcatttgagtaacaccatacaagacacgtga |
49598215 |
T |
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| Q |
203 |
ttaagaaaccaaaatgtttg-tggaaaatagtaaaccgttcgcttaaactttttattcgaaatactgttagtaatatgaaacacattct |
290 |
Q |
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| T |
49598214 |
ttaagaaaccaaaatgtttgttaaaaaaaaggaaaccgttcgcttaaactttttattcgaaatactgttagtaatatgaaacacattct |
49598126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 291 - 386
Target Start/End: Complemental strand, 49598089 - 49597994
Alignment:
| Q |
291 |
atagaatgaagcttcctatgacctgattcattgataaggagaaggaaaaggtaaatttgannnnnnnaaacagacgagtgttagtagttagttagt |
386 |
Q |
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| T |
49598089 |
atagaatgaagcttcctatgacctgattcattgataaggagaaggaaaaagtaaatttgatttttttaaacagatgagtgttagtagttagttagt |
49597994 |
T |
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