View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16517_high_6 (Length: 392)
Name: NF16517_high_6
Description: NF16517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16517_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 73 - 375
Target Start/End: Original strand, 34003383 - 34003685
Alignment:
| Q |
73 |
atcaaattgtaaaaggctaaatgaacattggagtatatgttagggcttactagtgtgtaaatattaaatttataaaataatatatatgcctcaataattt |
172 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34003383 |
atcaaattgtaaaaggctaaatgaacattggagtatatgttagggcttactagtgtattaatattaaatttataaaataatatatatgcctcaataattt |
34003482 |
T |
|
| Q |
173 |
attaagtttgacaaatggaggttataataaagggaagcttaccaagagtatcattgaggtaaaaaggaccattcttgatagcccaatcagagtagttata |
272 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34003483 |
attaagtttgacaaatggagtttataataaagggaagcttaccaagagtatcattgaggtaaaaaggaccattcttgatagcccaatcagagtagttata |
34003582 |
T |
|
| Q |
273 |
gccaaagtgccaattttgagagccaccaacaatgatcttcttaggttgttgttctgtcttatttatttgatgatgatggtttccaaatctggaccaccaa |
372 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34003583 |
gccaaagtgccaattttgagagccaccaacaatgatgttcttaggttgttgttcagtcttatttatttgatgatgatgatttccaaatctggaccaccaa |
34003682 |
T |
|
| Q |
373 |
tca |
375 |
Q |
| |
|
||| |
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|
| T |
34003683 |
tca |
34003685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 34007759 - 34008150
Alignment:
| Q |
1 |
tcatatttgaaaactacacatgcataaatatcaaatatcaacatcatataagaattcgtaccgtaaggcgcaatcaaattgtaaaaggctaaatgaacat |
100 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||| | ||||||| ||||| |||||| ||| ||||||| ||||| |
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| T |
34007759 |
tcatacttgaaaactacacatgcataaatatcaaatatcaacattatataaga-ttcatgccgtaagta-caatcgaattgtgaaatgctaaatcaacat |
34007856 |
T |
|
| Q |
101 |
tggagtatatgttagggcttactagtgtgtaaatattaaatttataaaataatatatatgcctcaataatttat---taagtttgacaaatggaggttat |
197 |
Q |
| |
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||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||| ||||| ||||||| |||| |
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| T |
34007857 |
tggagtatatgttagggtttactagtgtataaatattaaatttataaaataatatgtatgcctcaataatttatgattaatcttgaccaatggagtttat |
34007956 |
T |
|
| Q |
198 |
aa----------------taaagggaagcttaccaagagtatcattgaggtaaaaaggaccattcttgatagcccaatcagagtagttatagccaaagtg |
281 |
Q |
| |
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|| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34007957 |
aatttattttataaataataaagggaagcttaccgagagtatcattgaggtaaaaaggaccattcttaatagcccaatcagagtagttatagccaaagtg |
34008056 |
T |
|
| Q |
282 |
ccaattttgagagccaccaacaatgatcttcttaggttgttgttctgtcttatttatttgatgatgatggtttccaaatctggaccaccaatca |
375 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34008057 |
ccaattttgagagccaccaacaatgatgttcttaggttgttgttcagtcttatttatttgatgatgatggtttccaaatctggaccaccaatca |
34008150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 33995217 - 33995567
Alignment:
| Q |
1 |
tcatatttgaaaactacacatgcataaatatcaaatatcaacatcatataagaattcgtaccgtaaggcgcaatcaaattgtaaaaggctaaatgaacat |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| |||| || ||||||| |||||||||||||||| |||||||||| |
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| T |
33995217 |
tcatatttgaaaactacacatggataaatatcaaatatcaacatcatataataatttgtcccgtaagta-caatcaaattgtaaaatgctaaatgaa--- |
33995312 |
T |
|
| Q |
101 |
tggagtatatgttagggcttact----agtgtgtaaatattaaatttataaaataatatatatgcctcaataatttattaagtttgacaaatggaggtta |
196 |
Q |
| |
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| |||||| ||||||| | ||| |||||||||| ||||||||||||||||||||||||||| ||||||| | | || |
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| T |
33995313 |
-------tgtgttagagcttactgagtaatgtataaatattaa-tttataaaataatatatatgcctcaatgatttatt-----tta-----------ta |
33995388 |
T |
|
| Q |
197 |
taataaagggaagcttaccaagagtatcattgaggtaaaaaggaccattcttgatagcccaatcagagtagttatagccaaagtgccaattttgagagcc |
296 |
Q |
| |
|
|| ||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| |
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|
| T |
33995389 |
tattaaagtgaagcttactgagagtatcattgacgtaaaaaggaccattcttgatagcccaatctgaatagttatagccaaaatgccaattttgagagcc |
33995488 |
T |
|
| Q |
297 |
accaacaatgatcttcttaggttgttgttctgtcttatttatttgatgatgatggtttccaaatctggaccaccaatca |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33995489 |
accaacaatgatcttcttaggttgttgttctgtcttatttatttgatgatgatggtttccaaatctggaccaccaatca |
33995567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 208 - 375
Target Start/End: Original strand, 34000093 - 34000260
Alignment:
| Q |
208 |
agcttaccaagagtatcattgaggtaaaaaggaccattcttgatagcccaatcagagtagttatagccaaagtgccaattttgagagccaccaacaatga |
307 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34000093 |
agcttaccgagggtatcattgaggtaaaaaggaccattcttgatagcccaatcagagtagttatagccaaagtgccaattttgagagccaccaacaatga |
34000192 |
T |
|
| Q |
308 |
tcttcttaggttgttgttctgtcttatttatttgatgatgatggtttccaaatctggaccaccaatca |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
34000193 |
tcttcttaggttgttgttctgtcttatttatttgacgatgatggtttccaaatctggaccaccaatca |
34000260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 194 - 317
Target Start/End: Original strand, 33993353 - 33993476
Alignment:
| Q |
194 |
ttataataaagggaagcttaccaagagtatcattgaggtaaaaaggaccattcttgatagcccaatcagagtagttatagccaaagtgccaattttgaga |
293 |
Q |
| |
|
||||||||||| ||| | |||| |||||||| ||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||| |
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|
| T |
33993353 |
ttataataaagtgaaccataccgagagtatcgttgaggtaaaaaggaccattcttaatagctcaatcagaatagttgtagccaaagtgccaattttgaga |
33993452 |
T |
|
| Q |
294 |
gccaccaacaatgatcttcttagg |
317 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
33993453 |
gccaccaacaatgatcttcttagg |
33993476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 33999980 - 34000099
Alignment:
| Q |
1 |
tcatatttgaaaactacacatgcataaatatcaaatatcaacatcatataagaattcgtaccgtaaggcgcaatcaaattgtaaaaggctaaatgaacat |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||| | |||||| | ||||| |||||||||| ||||||||||||| |
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|
| T |
33999980 |
tcatacttgaaaactacacatgcataaatatcaaatatcaacattatataag-attcatgccgtaa-gtacaatcgaattgtaaaatgctaaatgaacat |
34000077 |
T |
|
| Q |
101 |
tggagtatatgttagggcttac |
122 |
Q |
| |
|
||||||||||||||| |||||| |
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|
| T |
34000078 |
tggagtatatgttagagcttac |
34000099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 34003348 - 34003381
Alignment:
| Q |
1 |
tcatatttgaaaactacacatgcataaatatcaa |
34 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
34003348 |
tcatatttgaaaactacacatgcataaatatcaa |
34003381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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