View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16517_low_10 (Length: 422)

Name: NF16517_low_10
Description: NF16517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16517_low_10
NF16517_low_10
[»] chr3 (3 HSPs)
chr3 (327-410)||(45179746-45179829)
chr3 (19-94)||(1605421-1605496)
chr3 (233-279)||(1605257-1605303)
[»] chr5 (4 HSPs)
chr5 (17-120)||(34980503-34980606)
chr5 (17-109)||(34980395-34980487)
chr5 (20-123)||(15549694-15549798)
chr5 (241-318)||(3289724-3289800)
[»] chr1 (2 HSPs)
chr1 (76-160)||(45123066-45123150)
chr1 (242-322)||(46815466-46815545)
[»] chr7 (5 HSPs)
chr7 (228-282)||(25078298-25078352)
chr7 (35-122)||(18777344-18777431)
chr7 (26-104)||(18777444-18777521)
chr7 (235-279)||(18779990-18780034)
chr7 (18-146)||(18780129-18780257)
[»] chr8 (2 HSPs)
chr8 (20-105)||(10150244-10150329)
chr8 (85-115)||(10150389-10150419)
[»] chr4 (1 HSPs)
chr4 (76-140)||(32720292-32720356)
[»] chr2 (3 HSPs)
chr2 (228-287)||(14437209-14437268)
chr2 (47-109)||(14437390-14437452)
chr2 (72-110)||(14437471-14437509)


Alignment Details
Target: chr3 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 327 - 410
Target Start/End: Original strand, 45179746 - 45179829
Alignment:
Q  327 tatgttgtgaaaatttgcatgtaatctcattctctagttttaaaattttcacgttatattcttgcgttcatgttgtgttccctt 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  45179746 tatgttgtgaaaatttgcatgtaatctcattctctagttttaaaattttcacattatattcttgtgttcatgttgtgttccctt 45179829  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 1605496 - 1605421
Alignment:
Q  19 gtgcaagacaagcaatgttgcttcttgaagtgcaagacaagtaagatgcttctttcgcttgtttactttcttgctt 94  Q
    |||||||||||  || |||| |||||||||||||||||||| ||| || ||| ||| |||| ||||||||||||||    
T  1605496 gtgcaagacaattaaggttgtttcttgaagtgcaagacaagcaaggtggttccttcacttggttactttcttgctt 1605421  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 1605303 - 1605257
Alignment:
Q  233 actcttgccttagagtgttgggagatgtagttaggtatttgctttgg 279  Q
    ||||||| |||||||||||  ||||||||||||||||||| ||||||    
T  1605303 actcttgtcttagagtgttatgagatgtagttaggtattttctttgg 1605257  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 34980503 - 34980606
Alignment:
Q  17 aagtgcaagacaagcaatgttgcttcttgaagtgcaagacaagtaagatgcttctttcgcttgtttactttcttgcttgacaagtcttgtaggtcacaat 116  Q
    ||||||||| ||| ||| |||| |||||||||| ||||||||| ||| || ||| ||| |||||||||||||||||||| ||||||||||||| |||||     
T  34980503 aagtgcaagtcaaacaaagttgtttcttgaagtccaagacaagcaaggtgattccttcacttgtttactttcttgcttggcaagtcttgtaggacacaag 34980602  T
Q  117 gttg 120  Q
    ||||    
T  34980603 gttg 34980606  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 34980487 - 34980395
Alignment:
Q  17 aagtgcaagacaagcaatgttgcttcttgaagtgcaagacaagtaagatgcttctttcgcttgtttactttcttgcttgacaagtcttgtagg 109  Q
    ||||||||||||||||| |||| ||||||||||||||| |||| ||| || ||| |||  |||||||||||||| |||||||| |||||||||    
T  34980487 aagtgcaagacaagcaaggttgtttcttgaagtgcaaggcaagcaaggtgattccttcagttgtttactttcttacttgacaactcttgtagg 34980395  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 15549798 - 15549694
Alignment:
Q  20 tgcaagacaagcaatgttgcttcttgaagtgc-aagacaagtaagatgcttctttcgcttgtttactttcttgcttgacaagtcttgtaggtcacaatgt 118  Q
    ||||||| ||||||  ||| || ||||||||| |||||||||||| || ||| ||| ||||||| ||||||||| |||||||| ||||||| ||||||||    
T  15549798 tgcaagataagcaagattgttttttgaagtgctaagacaagtaaggtggttcattcacttgtttcctttcttgcatgacaagtattgtaggccacaatgt 15549699  T
Q  119 tgttt 123  Q
    |||||    
T  15549698 tgttt 15549694  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 318
Target Start/End: Original strand, 3289724 - 3289800
Alignment:
Q  241 cttagagtgttgggagatgtagttaggtatttgctttggaggatgtgagtgtagtgggagacgatgggtgtttgagag 318  Q
    |||||||||||| ||||||||||||||||||| ||||||| | |||| ||||| | || | |||||||||||||||||    
T  3289724 cttagagtgttgtgagatgtagttaggtattttctttggacggtgtgggtgtactagg-gccgatgggtgtttgagag 3289800  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 160
Target Start/End: Original strand, 45123066 - 45123150
Alignment:
Q  76 cttgtttactttcttgcttgacaagtcttgtaggtcacaatgttgtttacgaaagtgcaagacaaacatagtgatgtctatatat 160  Q
    |||||||||||| |||||||||||||||||||||| ||||| ||||||    |||||||||||||||| ||||||  ||||||||    
T  45123066 cttgtttactttattgcttgacaagtcttgtaggtgacaatattgtttcttgaagtgcaagacaaacaaagtgatacctatatat 45123150  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 322
Target Start/End: Original strand, 46815466 - 46815545
Alignment:
Q  242 ttagagtgttgggagatgtagttaggtatttgctttggaggatgtgagtgtagtgggagacgatgggtgtttgagagtagt 322  Q
    ||||||||||| || ||||| ||| |||||||||||||||| ||||| |||| | |||| | ||||||||| |||| ||||    
T  46815466 ttagagtgttgtgaaatgtacttaagtatttgctttggagggtgtgaatgta-ttggagccaatgggtgttcgagaatagt 46815545  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 228 - 282
Target Start/End: Original strand, 25078298 - 25078352
Alignment:
Q  228 cttaaactcttgccttagagtgttgggagatgtagttaggtatttgctttggagg 282  Q
    |||| ||||||| |||||||||||| |||||||| ||||||||||||||||||||    
T  25078298 cttatactcttgtcttagagtgttgtgagatgtaattaggtatttgctttggagg 25078352  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 122
Target Start/End: Complemental strand, 18777431 - 18777344
Alignment:
Q  35 gttgcttcttgaagtgcaagacaagtaagatgcttctttcgcttgtttactttcttgcttgacaagtcttgtaggtcacaatgttgtt 122  Q
    |||| |||||||||| ||||||||| || ||| ||| |||  || |||||||||||| ||| |||||||| |||| ||||| ||||||    
T  18777431 gttgtttcttgaagttcaagacaagcaatatggttccttcaattctttactttcttgtttggcaagtcttatagggcacaaggttgtt 18777344  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 18777521 - 18777444
Alignment:
Q  26 acaagcaatgttgcttcttgaagtgcaagacaagtaagatgcttctttcgcttgtttactttcttgcttgacaagtctt 104  Q
    ||||||||||| | |||||||||||| ||||||| | | || ||| ||| |||||||||||||||  ||||||||||||    
T  18777521 acaagcaatgtggtttcttgaagtgcgagacaag-atggtggttccttcacttgtttactttcttatttgacaagtctt 18777444  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 18780034 - 18779990
Alignment:
Q  235 tcttgccttagagtgttgggagatgtagttaggtatttgctttgg 279  Q
    ||||| |||||||||||| ||||||||||||| ||||| ||||||    
T  18780034 tcttgtcttagagtgttgtgagatgtagttagatattttctttgg 18779990  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 18780257 - 18780129
Alignment:
Q  18 agtgcaagacaagcaatgttgcttcttgaagtgcaagacaagtaagatgcttctttcgcttgtttactttcttgcttgacaagtcttgtaggtcacaatg 117  Q
    ||||||||||||| || |||  |||||||||| ||| ||||| | | || |||  || |||| ||| ||||||||||| ||||||||| | | ||||| |    
T  18780257 agtgcaagacaagtaaggttatttcttgaagttcaacacaagcatggtggttccatcacttggttagtttcttgcttggcaagtcttgcatgccacaagg 18780158  T
Q  118 ttgtttacgaaagtgcaagacaaacatag 146  Q
    || |||   ||| ||||||||||||||||    
T  18780157 ttttttcttaaattgcaagacaaacatag 18780129  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 10150244 - 10150329
Alignment:
Q  20 tgcaagacaagcaatgttgcttcttgaagtgcaagacaagtaagatgcttctttcgcttgtttactttcttgcttgacaagtcttg 105  Q
    |||||||||||||||||||  ||||||||||||||||||| || | | ||| |||  ||||||||||| ||| ||| |||||||||    
T  10150244 tgcaagacaagcaatgttgtatcttgaagtgcaagacaagcaaaacggttcattcatttgtttacttttttgtttggcaagtcttg 10150329  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 115
Target Start/End: Original strand, 10150389 - 10150419
Alignment:
Q  85 tttcttgcttgacaagtcttgtaggtcacaa 115  Q
    |||||||||||||||||||||||||||||||    
T  10150389 tttcttgcttgacaagtcttgtaggtcacaa 10150419  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 32720356 - 32720292
Alignment:
Q  76 cttgtttactttcttgcttgacaagtcttgtaggtcacaatgttgtttacgaaagtgcaagacaa 140  Q
    ||||| || |||||||||||||||||| |||||||||||| |||||||    |||||||||||||    
T  32720356 cttgtgtagtttcttgcttgacaagtcctgtaggtcacaaggttgttttatgaagtgcaagacaa 32720292  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 287
Target Start/End: Complemental strand, 14437268 - 14437209
Alignment:
Q  228 cttaaactcttgccttagagtgttgggagatgtagttaggtatttgctttggaggatgtg 287  Q
    |||| ||||||| |||| ||||||| ||||||||||||||||||| ||||| ||| ||||    
T  14437268 cttatactcttgtcttaaagtgttgtgagatgtagttaggtatttactttgtagggtgtg 14437209  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 14437452 - 14437390
Alignment:
Q  47 agtgcaagacaagtaagatgcttctttcgcttgtttactttcttgcttgacaagtcttgtagg 109  Q
    |||||||||||||||| ||| ||  |  | ||||||||||||||||||||||||| |||||||    
T  14437452 agtgcaagacaagtaatatggtttctatgtttgtttactttcttgcttgacaagtattgtagg 14437390  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 14437509 - 14437471
Alignment:
Q  72 ttcgcttgtttactttcttgcttgacaagtcttgtaggt 110  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  14437509 ttcgcttgtatactttcttgtttgacaagtcttgtaggt 14437471  T

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