View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16517_low_13 (Length: 363)
Name: NF16517_low_13
Description: NF16517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16517_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 7e-74; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 205 - 345
Target Start/End: Original strand, 32615342 - 32615482
Alignment:
| Q |
205 |
tcattacccaaattccttattcaagctgttaggtgcagctgtagacgccttcccaccaccatatttcgcaacaaaatcatccttcacacgctccagaaaa |
304 |
Q |
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| T |
32615342 |
tcattacccaaattccttattcaagctgttaggtgcagctgtagacgccttcccaccaccatatttcgcaacaaaatcatccttcacacgctccagaaaa |
32615441 |
T |
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| Q |
305 |
gccaccggcacttgtcttccaacagtttcatccgcaacaac |
345 |
Q |
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| T |
32615442 |
gccaccggcacttgtcttccaacagtttcatccgcaacaac |
32615482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 32615163 - 32615272
Alignment:
| Q |
14 |
catcacgacacctttcacttcagacacctgagctttcaccttagcaagcttactcacctcctccgggtgatcaacacagtactgcatatgttccttcaat |
113 |
Q |
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| T |
32615163 |
catcatgacacctttcacttcagacacctgagctttcaccttagcaagcttactcacctcctccgggtgatcaacacaatactgcatatgttccttcaat |
32615262 |
T |
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| Q |
114 |
tttggcctgc |
123 |
Q |
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| T |
32615263 |
tttggcctgc |
32615272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 7535866 - 7535960
Alignment:
| Q |
24 |
cctttcacttcagacacctgagctttcaccttagcaagcttactcacctcctccgggtgatcaacacagtactgcatatgttccttcaattttgg |
118 |
Q |
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| T |
7535866 |
cctttgacttcagaaacttgagctttcactttagcaagtttgctaacctcctccggatgttccacacaatattgcatttgctccttcaactttgg |
7535960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 7489784 - 7489878
Alignment:
| Q |
24 |
cctttcacttcagacacctgagctttcaccttagcaagcttactcacctcctccgggtgatcaacacagtactgcatatgttccttcaattttgg |
118 |
Q |
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| T |
7489784 |
cctttgacttcagaaacttgtgctttcactttagcaagttttctaacctcctccggatgttccacacaatactgtatctgctccttcaactttgg |
7489878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 10692667 - 10692559
Alignment:
| Q |
14 |
catcacgacacctttcacttcagacacctgagctttcaccttagcaagcttactcacctcctccgggtgatcaacacagtactgcatatgttccttcaat |
113 |
Q |
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| T |
10692667 |
catcatgacacctttaacttcagaaacctgagctttcacctttgcaagcttgcttatctcgtcaggatgatcaacacagtactgcatatgttccttcaac |
10692568 |
T |
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| Q |
114 |
tttggcctg |
122 |
Q |
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| T |
10692567 |
tttggcctg |
10692559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 241 - 345
Target Start/End: Complemental strand, 10692435 - 10692331
Alignment:
| Q |
241 |
agctgtagacgccttcccaccaccatatttcgcaacaaaatcatccttcacacgctccagaaaagccaccggcacttgtcttccaacagtttcatccgca |
340 |
Q |
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| T |
10692435 |
agctgtagaagccttttcaccaccatattttgacacaaaatcatccttgacacgctctagaaaggccatgggaacctgtcttccagttgtttcatctgca |
10692336 |
T |
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| Q |
341 |
acaac |
345 |
Q |
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||||| |
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| T |
10692335 |
acaac |
10692331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 21239636 - 21239563
Alignment:
| Q |
39 |
acctgagctttcaccttagcaagcttactcacctcctccgggtgatcaacacagtactgcatatgttccttcaa |
112 |
Q |
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| T |
21239636 |
acctgagcttgcactttagaaagcttgctaatctcctctgggtgttcaacacagtactgcatctgctccttcaa |
21239563 |
T |
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