View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16517_low_14 (Length: 362)
Name: NF16517_low_14
Description: NF16517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16517_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 27261737 - 27262082
Alignment:
| Q |
1 |
ttgtaacttctaagtgatgatgatattccactttcgcattgtttatgcagtgttgtatgcatcattatattttttctagaatgtatgggatttttgttga |
100 |
Q |
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| T |
27261737 |
ttgtaacttctaagtgatgatgatattccactttcgcattgtttatgcagtgttgtatgcatcattatattttttctagaatgtatgggatttttgttga |
27261836 |
T |
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| Q |
101 |
gaatttgtagatgccctaagtaacgatattccgattttacattgttgataaaatattgtatgtttcattgtaataatctattgagtcttattttttgttg |
200 |
Q |
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| T |
27261837 |
gaatttgtagatgccctaagtaacgatattccgattttacattgttgataaaatattgtatgtttcattgtaataatctattgagtcttattttttgttg |
27261936 |
T |
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| Q |
201 |
cttgtgtgtggatgcagaaaacaattgcttcaccaggacgtggtattttggccatggatgagtccaatgctacttgtgggaaaagtttggcttccattgg |
300 |
Q |
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| T |
27261937 |
cttgtgtgtggatgcagaaaacaattgcttcaccaggacgtggtattttggccatggatgagtccaatgctacttgtgggaaaagtttggcttcaattgg |
27262036 |
T |
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| Q |
301 |
gctagagaacaccgaagttaaccgcccagcatggcgtactcttctg |
346 |
Q |
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| T |
27262037 |
gctagagaacaccgaagttaaccgcccagcatggcgtactcttctg |
27262082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 135 - 345
Target Start/End: Original strand, 27250043 - 27250252
Alignment:
| Q |
135 |
ttttacattgttgataaaatattgtatgtttcattgtaataatctattgagtcttattttttgttgcttgtgtgtggatgcagaaaacaattgcttcacc |
234 |
Q |
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| T |
27250043 |
ttttacatcgttgtttcaatattttatgtttcattgttctaatttcttgtgtcttgtttt-tgttgcttgtgtgtggatgcagaaaacaattgcttcacc |
27250141 |
T |
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| Q |
235 |
aggacgtggtattttggccatggatgagtccaatgctacttgtgggaaaagtttggcttccattgggctagagaacaccgaagttaaccgcccagcatgg |
334 |
Q |
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| T |
27250142 |
agggcgtggtattttagccatggatgaatccaatgctacatgtggaaagcgtttggcttcaattgggctagaaaacactgaagctaaccgccaagcatgg |
27250241 |
T |
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| Q |
335 |
cgtactcttct |
345 |
Q |
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| T |
27250242 |
cgtacccttct |
27250252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 152 - 345
Target Start/End: Original strand, 21194287 - 21194479
Alignment:
| Q |
152 |
aatattgtatgtttcattgtaataatctattgagtcttattttttgttgcttgtgtgtggatgcagaaaacaattgcttcaccaggacgtggtattttgg |
251 |
Q |
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| T |
21194287 |
aatattttatgtttcattgttctaatttcttgtgtcttgtttt-tgttgcttgtgtgtggatgcagaaaacaattgcttcaccagggcgtggaattttag |
21194385 |
T |
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| Q |
252 |
ccatggatgagtccaatgctacttgtgggaaaagtttggcttccattgggctagagaacaccgaagttaaccgcccagcatggcgtactcttct |
345 |
Q |
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| T |
21194386 |
ccatggatgaatccaatgctacatgtggaaagcgtttggcttcaattgggctagaaaacactgaagctaaccgccaagcatggcgtacccttct |
21194479 |
T |
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