View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16517_low_15 (Length: 360)
Name: NF16517_low_15
Description: NF16517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16517_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 16 - 343
Target Start/End: Original strand, 12270833 - 12271159
Alignment:
| Q |
16 |
agatgaaggtacacgatcaagagtttaaactttaattaaaacgtttattcttcttttttcttcttctattataacctttgacgaaatgaatgtgagaaaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12270833 |
agatgaaggtacacgatcaagagtttaaactttaattaaaacgtttattcttcttttttctacttctattataacctttgacgaaatgaatgtgagaaaa |
12270932 |
T |
|
| Q |
116 |
ttaaataaaaaccctaaactgttgtacaaggcctttattaatttgagctacattaaatatttaacgttgcacgtttcccaagtaaaaaacgcgttttctt |
215 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12270933 |
ttaaataaaaaccctaaactgatgtacaaggtctttattaatttgagctacattaaatatttaacgttgcacgtttcccaagtaaaaaacgcgttttctt |
12271032 |
T |
|
| Q |
216 |
ttgggtttttgcattaaaaatctttcagctatgaacaaacatctattactactaggaagtgataagaaaagagttttcaattttgatttcataatagtta |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12271033 |
ttgggtttttgcattaaaaatctttcagctatgaacaaacatctattactactaggaagtgataagaaaagagttttcaattttgatttcat-atagtta |
12271131 |
T |
|
| Q |
316 |
tggttattggtgttgtccatcatataca |
343 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
12271132 |
tggttattggtgttgtccatcatataca |
12271159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University