View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16517_low_16 (Length: 358)
Name: NF16517_low_16
Description: NF16517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16517_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 75 - 357
Target Start/End: Complemental strand, 37054426 - 37054143
Alignment:
| Q |
75 |
ttgagaagatgattatgttaatgtgttatttaatatt-agattgatggtgagattttcataatcaaggtgggctaacataattttaacaaaacatacact |
173 |
Q |
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| T |
37054426 |
ttgagaagatgattatgttgatgtgttatttaatatttagattgatggtgagattttcataatcaaggtgggctaacataattttaacaaaacctacgct |
37054327 |
T |
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| Q |
174 |
ataatatttgtaacttgatccactaataattctgaagtctctaggaacatcaacaatgatctttgtgaaacgagaaatcaaatattggacttaaacgtga |
273 |
Q |
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| T |
37054326 |
ataacatttgtaacttgatgcactaataattttgaagtctctaggaacatcaacaatgatctttgtgaaacgagaaatcaaatattggacttaaacatga |
37054227 |
T |
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| Q |
274 |
cacaaacatgaaaacaaaccgtgtcatggtgtcacattgatcttaaaatgtcatggtgataataatgggcaacaaacttgcata |
357 |
Q |
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| T |
37054226 |
cacagacatgaaaacaaaccgtgtcatggtgtcacattgatcttaaaatgtcatggtgataataatgggcaacaaacttgcata |
37054143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 37054454 - 37054410
Alignment:
| Q |
15 |
aggcgacaaacttgcatcagtgcttaagttgagaagatgattatg |
59 |
Q |
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| T |
37054454 |
aggcgacaaacttgcatcggtgcttaagttgagaagatgattatg |
37054410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 37054155 - 37054116
Alignment:
| Q |
20 |
acaaacttgcatcagtgcttaagttgagaagatgattatg |
59 |
Q |
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| T |
37054155 |
acaaacttgcataagtgcttaagttgagaagatgattatg |
37054116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 37053920 - 37053884
Alignment:
| Q |
272 |
gacacaaacatgaaaacaaaccgtgtcatggtgtcac |
308 |
Q |
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| T |
37053920 |
gacacaaacatgaaaacaaaccatgtcatggtgtcac |
37053884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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