View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16517_low_17 (Length: 358)
Name: NF16517_low_17
Description: NF16517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16517_low_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 50 - 274
Target Start/End: Complemental strand, 11331853 - 11331641
Alignment:
| Q |
50 |
tttcacaatagtattttactgcaaggttactatctaaactaacataaattctaccttgaatattt-gtttgtaaaaatctcatcaccaatataacttgtt |
148 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
11331853 |
tttcacaatagtattttactgcaaggttactatctaaactaacataaattctaccttgaatattttgtttgtaaaaatctcatcaccagtataacttgtt |
11331754 |
T |
|
| Q |
149 |
cctaaagtactcctccataataagaagttatacacactctcattcctaaagtttagtaaggcccatttttacaccattataactcaaaacaaattcaatg |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||| |
|
|
| T |
11331753 |
cctaaagtactcctccataataagaagttatacacactctcattcctaaagtttagtaaggcc-----------cattaaaactc--aacaaattcaatg |
11331667 |
T |
|
| Q |
249 |
atttgcctaccaaaactggtacatct |
274 |
Q |
| |
|
||||||||||||||| |||||||||| |
|
|
| T |
11331666 |
atttgcctaccaaaagtggtacatct |
11331641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 272 - 348
Target Start/End: Complemental strand, 11331512 - 11331432
Alignment:
| Q |
272 |
tctggctatcatagcctgcaacattttatgttaaattatcagaagataaactatg----atatgtacatgatgattatgat |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11331512 |
tctggctatcatagcctgcaacattttatgtaaaattatcagaagataaactatgatatatatgtacatgatgattatgat |
11331432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 272 - 327
Target Start/End: Original strand, 7176953 - 7177008
Alignment:
| Q |
272 |
tctggctatcatagcctgcaacattttatgttaaattatcagaagataaactatga |
327 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||| |||||||||||||||||| |
|
|
| T |
7176953 |
tctggctatcatagcctgcagtattttgtgttaaattgtcagaagataaactatga |
7177008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University