View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16517_low_19 (Length: 346)
Name: NF16517_low_19
Description: NF16517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16517_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 10 - 328
Target Start/End: Complemental strand, 10536994 - 10536676
Alignment:
| Q |
10 |
acatcatcagatgcatgtttaaaacaattttacaccgacagctgcaaaaactcattattattcattgaagggaaaa-caattcaaaataactttacgccg |
108 |
Q |
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| T |
10536994 |
acatcattagatgcatgtttaaaacaattttacaccgacagctgcaaaaactcattattattcattgaagggaaaaacaattcaaaagaactctacaccg |
10536895 |
T |
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| Q |
109 |
acagtttataactttatagaaatacataattgaatgcatgtgtaaaatcattttacactgacagtgtatagaagaaattaaactgaaaaaactatatgat |
208 |
Q |
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| T |
10536894 |
acagtttataactttatagaaatacataattgaatgcatgtgaaaaatcattttacactgacagtgtatagaagaaattaaactgaaaaa-ctatataat |
10536796 |
T |
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| Q |
209 |
tatttgaagtnnnnnnngaattaaaaatgtaggttatgtacctgattgacaaggacaacacgatgatcatgaagctgttgaatgatcatatcacaaacag |
308 |
Q |
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| T |
10536795 |
taattgaagtaaaaaaagaattaaaaatgtaggttatgtacctgattgacaaggacaacacgatgatcatgaagctgttgaatgatcatatcacaaacag |
10536696 |
T |
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| Q |
309 |
tggtttttccagaagcagtt |
328 |
Q |
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| T |
10536695 |
tggtttttccagaagcagtt |
10536676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 306
Target Start/End: Complemental strand, 42273024 - 42272965
Alignment:
| Q |
247 |
tacctgattgacaaggacaacacgatgatcatgaagctgttgaatgatcatatcacaaac |
306 |
Q |
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| T |
42273024 |
tacctgatttacaagtacaaccctctgatcatgaagctgttggataatcatatcacaaac |
42272965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 1955359 - 1955408
Alignment:
| Q |
129 |
aatacataattgaatgcatgtgtaaaatcattttacactgacagtgtata |
178 |
Q |
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| T |
1955359 |
aatacataattaaatgtatgtgtaaaataattgtacactgacaatgtata |
1955408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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