View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16517_low_2 (Length: 873)
Name: NF16517_low_2
Description: NF16517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16517_low_2 |
 | |
|
| [»] scaffold0102 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 432; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 13 - 859
Target Start/End: Original strand, 5154052 - 5154898
Alignment:
| Q |
13 |
tcatcacatttgcagagcctttagcttcaatgtttcttttctccaaaaatgcaatcaaattctgatactgatctttggtcagcatcattccattttcatc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||| |||||||| ||||||||| |||||||||| |
|
|
| T |
5154052 |
tcatcacatttgcagagcctttagcttcaatgttgcttttctccaacagtgcaatcaaattctgatactggtctttggttagcatcatttcattttcatc |
5154151 |
T |
|
| Q |
113 |
atttttcctagtggaagcatttcccttgagctcagtttcttcactttccacaaaattagcattagcaaaagaatttcctcctcctcttccccaattagga |
212 |
Q |
| |
|
|||||||| | |||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5154152 |
atttttcccaatggaagtgcttcccttgagctcagtatcttcacattccacaaaattagcattagcaaaagaatttcctcctcctcttccccaattagga |
5154251 |
T |
|
| Q |
213 |
gggtaaccatgtttcttataacaagtttccacaatgtgattagttctattacagaaactacacactctgagagtccctcttcctcttccttgaaaaccat |
312 |
Q |
| |
|
|| ||||||||||||||||||| || ||||| ||||||||| |||||||| ||||| ||||| || |||||| | |||||||| |||||||||| || |
|
|
| T |
5154252 |
ggataaccatgtttcttataac-aggttccaaaatgtgattggttctattgcagaagctacataccctgagatttgctcttcctattccttgaaatgaat |
5154350 |
T |
|
| Q |
313 |
ttcctctacctcttccaaattgtctctgaccatccatggcattcacaaaaccagaagttgtatcatctatagtagtaacaggtgatgatacgacactgta |
412 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||||| |||| |||| |||||||||||||||||| ||| |||||| ||||| ||| | || |
|
|
| T |
5154351 |
ttcctctaccccttccaaattgcctctgaccatccatggcattaacaagaccacaagttgtatcatctataggagt---aggtgaagatactacatttta |
5154447 |
T |
|
| Q |
413 |
ctgcgtcttcgtttcttgctgcattaccatagagaaaactctatttatttgaggcaaatgatccattaataagacttgtgatgttacaccttgataatct |
512 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||| | ||||||||||| ||| ||| ||| || || |||| |||||| || ||||||||||| |
|
|
| T |
5154448 |
ctgcatctttctttcttgctgcattaccatagagaaaaccatgtttatttgaggtaaaggatacatcaacaacacttttgatgtcaccccttgataatca |
5154547 |
T |
|
| Q |
513 |
tcatttaaacccatcaaaaatttgatgattctatcttctgctctaaaacttttgttatttctcatagccaaacaagtacattgaattgtacatgtgcatt |
612 |
Q |
| |
|
||||| || ||||| ||||| ||||| ||||||||||||||| ||| | |||||||||||||||||| ||||||||||||||||||| ||| || || | |
|
|
| T |
5154548 |
tcattcaatcccattaaaaacttgataattctatcttctgctgtaagagctttgttatttctcatagcaaaacaagtacattgaattggacaggtacact |
5154647 |
T |
|
| Q |
613 |
gaggtattggcctgtactgatccaattcctcccataaacctctcaaattagtgaaaaattcagtaactttcttacttcc----ttcaaattagctatttc |
708 |
Q |
| |
|
|||| | |||||||| ||||||||||| ||||| ||||||||||||| |||||| ||||||||||||||||||||||| || | ||||| ||||| |
|
|
| T |
5154648 |
gaggcttaggcctgtattgatccaattcatcccacaaacctctcaaatcagtgaagaattcagtaactttcttacttccttgttttaggttagcaatttc |
5154747 |
T |
|
| Q |
709 |
ttcttgcaactgagcaacacgaattctatctcctctcatgaatctatctttaagatcattccacatatcaacaacattttctatgaatactacactttga |
808 |
Q |
| |
|
||||||||| |||||||| | ||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
5154748 |
ttcttgcaattgagcaactctaattctatcccccttcatgaatctatctttaaggccattccacatatcaacaacattttctacaaacactacactttga |
5154847 |
T |
|
| Q |
809 |
gcaattgaaggagaaatagaattgattatccaagtataaacaagattattg |
859 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| |||| ||||||||||||| |
|
|
| T |
5154848 |
gcaattgaaggtgaaatagaattggttatccaggtatgaacaagattattg |
5154898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 691 - 859
Target Start/End: Complemental strand, 22841490 - 22841322
Alignment:
| Q |
691 |
cttcaaattagctatttcttcttgcaactgagcaacacgaattctatctcctctcatgaatctatctttaagatcattccacatatcaacaacattttct |
790 |
Q |
| |
|
|||||||||||| ||||||| ||||| |||||||| | ||||||||| |||||||| || | |||||| | ||||||||||||||| | |||||||| |
|
|
| T |
22841490 |
cttcaaattagcaatttcttgatgcaattgagcaaccctaattctatcacctctcataaaacgatctttcaaatcattccacatatctatcgcattttct |
22841391 |
T |
|
| Q |
791 |
atgaatactacactttgagcaattgaaggagaaatagaattgattatccaagtataaacaagattattg |
859 |
Q |
| |
|
||||||||||||||||| ||||| ||||| | ||| || ||||| ||||| |||| ||||||||||||| |
|
|
| T |
22841390 |
atgaatactacactttgtgcaatagaaggtgtaattgagttgataatccatgtatgaacaagattattg |
22841322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 173 - 345
Target Start/End: Complemental strand, 22842012 - 22841837
Alignment:
| Q |
173 |
attagcaaaagaatttcctcctcctcttccccaattaggagggtaaccatgtttcttataacaagtttccacaatgtgattagttctattacagaaacta |
272 |
Q |
| |
|
||||||| | ||||||||||| ||||||||||| || |||||||| ||||| ||||| |||||||||||||| ||||||||||||| | ||| || || |
|
|
| T |
22842012 |
attagcataggaatttcctccacctcttccccagtttggagggtatccatgcttcttgtaacaagtttccactgtgtgattagttctttcacaaaaggta |
22841913 |
T |
|
| Q |
273 |
cacactctgagagtccctcttcctcttccttgaaaa---ccatttcctctacctcttccaaattgtctctgaccat |
345 |
Q |
| |
|
|| | ||| | | |||||||||||||||||| || ||||||||||||||||| ||||| ||| | ||||||| |
|
|
| T |
22841912 |
caaaatcttccattacctcttcctcttccttgagaagacccatttcctctacctctgccaaactgtttttgaccat |
22841837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 691 - 859
Target Start/End: Original strand, 15525906 - 15526074
Alignment:
| Q |
691 |
cttcaaattagctatttcttcttgcaactgagcaacacgaattctatctcctctcatgaatctatctttaagatcattccacatatcaacaacattttct |
790 |
Q |
| |
|
|||||||||||| ||||| | ||||| ||||||| | ||||||||| |||| ||| || | |||||| | |||||| |||||||| || |||||||| |
|
|
| T |
15525906 |
cttcaaattagcaatttcctgatgcaatggagcaaccctaattctatcacctcgcataaaacgatctttcaaatcatttcacatatccactgcattttct |
15526005 |
T |
|
| Q |
791 |
atgaatactacactttgagcaattgaaggagaaatagaattgattatccaagtataaacaagattattg |
859 |
Q |
| |
|
||||| || | |||||| ||||| ||||| | ||| || || || ||||| ||| ||||||||||||| |
|
|
| T |
15526006 |
atgaaaaccatactttgtgcaatggaaggtgtaattgagttaataatccatatatgaacaagattattg |
15526074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 409 - 859
Target Start/End: Complemental strand, 20594163 - 20593709
Alignment:
| Q |
409 |
tgtactgcgtcttcgtttcttgctgcattaccatagagaaaactctatttatttgaggcaaatgatccattaataagacttgtgatgttacaccttgata |
508 |
Q |
| |
|
|||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20594163 |
tgtattgcatcttcctttcttgctgcattaccatagagaaaactctatttatttgaggcaaaggatccattaacaagacttgtgatgttacaccttgata |
20594064 |
T |
|
| Q |
509 |
atcttcatttaaacccatcaaaaatttgatgattctatcttctgctctaaaacttttgttatttctcatagccaaacaagtacattgaattgtacatgtg |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
20594063 |
atcttcatttaaacccatcaaaaatttgatgattctatcttctgctataaagcttttgttatttctcacagccaaacaagtacattgaattggacatgtg |
20593964 |
T |
|
| Q |
609 |
cattgaggtattggcctgtactgatccaattcctcccataaacctctcaaattagtgaaaaattcagtaactttcttacttcc----ttcaaattagcta |
704 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
20593963 |
cattgaggcattggcctgtactgatccaattcctcccataaacctctcaaattagtgaaaaattcagtaactttcttacttccctgtttcaaattagcta |
20593864 |
T |
|
| Q |
705 |
tttcttcttgcaactgagcaacacgaattctatctcctctcatgaatctatctttaagatcattccacatatcaacaacattttctatgaatactacact |
804 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
20593863 |
tttcttcttgcaactcagctacacgaattctatctcctctcatgaatctatctttaagatcatttcacatatcaacaacattttctatgaacactacact |
20593764 |
T |
|
| Q |
805 |
ttgagcaattgaaggagaaatagaattgattatccaagtataaacaagattattg |
859 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20593763 |
ttgagcaattgaaggcgaaatagaattgattatccaagtataaacaagattattg |
20593709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 13 - 402
Target Start/End: Complemental strand, 20599980 - 20599591
Alignment:
| Q |
13 |
tcatcacatttgcagagcctttagcttcaatgtttcttttctccaaaaatgcaatcaaattctgatactgatctttggtcagcatcattccattttcatc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
20599980 |
tcatcacatttgcagagcctttagcttcaatgttgcttttctccaacaatgcaatcaaattctgatactgatctttggttagcattattccattttcatc |
20599881 |
T |
|
| Q |
113 |
atttttcctagtggaagcatttcccttgagctcagtttcttcactttccacaaaattagcattagcaaaagaatttcctcctcctcttccccaattagga |
212 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20599880 |
atttttcccagtggaagcatttcccttgagctcagtttcttcactttccacaaaattagcattagcaaaagaatttcctcctcctcttccccaattagga |
20599781 |
T |
|
| Q |
213 |
gggtaaccatgtttcttataacaagtttccacaatgtgattagttctattacagaaactacacactctgagagtccctcttcctcttccttgaaaaccat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
20599780 |
gggtaaccatgtttcttataacaagttttcacagtgtgattagttctattacagaaactacacactctgagattccctcttcctcttccttgaaaaccat |
20599681 |
T |
|
| Q |
313 |
ttcctctacctcttccaaattgtctctgaccatccatggcattcacaaaaccagaagttgtatcatctatagtagtaacaggtgatgata |
402 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
20599680 |
ttcctctacctataccaaattgtctctgaccatccatggcattcacaaaaccagaagctatatcatctatagtagtaacaggtgatgata |
20599591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 181 - 859
Target Start/End: Original strand, 4695605 - 4696290
Alignment:
| Q |
181 |
aagaatttcctcctcctcttccccaattaggagggtaaccatgtttcttataacaagtttccacaatgtgattagttctattacagaaactacacactct |
280 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| | ||||| |||||||||||||| |||| ||||||| | || ||||||| |||| ||||| |
|
|
| T |
4695605 |
aagaatttcctcctcctctaccccaattaggaggaaagccatgcttcttataacaagtctccatggtgtgatttgaccttccacagaaattacaaactct |
4695704 |
T |
|
| Q |
281 |
gagagtccctcttcctcttccttgaaaacca---tttcctctacctcttccaaattgtctctgaccatccatggcattcacaaaaccagaagttgtatca |
377 |
Q |
| |
|
| | ||||||||||||||||| |||||| |||||||| |||||||||||||| ||||| |||| | |||||||| || | || | | ||||| |
|
|
| T |
4695705 |
tccattgcctcttcctcttccttggaaaccagcatttcctcttcctcttccaaattgcctctgtgcatctacagcattcaccaatctagcactggtatcc |
4695804 |
T |
|
| Q |
378 |
tctatagtagtaacaggtgatgatacgacactgtactgcgtcttcgtttcttgctgcattaccatagagaaaactctatttatttgaggcaaatgatcca |
477 |
Q |
| |
|
|||| | || | |||||| | | || || || | |||| ||||||||||||| | |||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
4695805 |
tctacaacagaagcaggtgcaacaattataccatattgagccttcctttcttgctgcataatcatagagaaaactctattgatttgaggcaatggatcca |
4695904 |
T |
|
| Q |
478 |
ttaataagacttgtgatgttacaccttgataatcttcatttaaacccatcaaaaatttgatgattctatcttctgctctaaaacttttgttatttctcat |
577 |
Q |
| |
|
||||||| ||||| ||||| |||| |||||| |||||||| || || |||| ||||| ||||||||||| ||| ||| |||| ||| ||| | ||| |
|
|
| T |
4695905 |
ttaataaaacttgagatgtaacactttgatattcttcattcaacccaatcagaaattgaatgattctatcctctaatctgaaaccttttgcattacgcat |
4696004 |
T |
|
| Q |
578 |
agccaaacaagtacattgaattgtacatgtgcattgaggtattggcctgtactgatccaattcctcccataaacctctcaaattagtgaaaaattcagta |
677 |
Q |
| |
|
|||||||||| | || |||||| ||| ||||| ||||| || ||||| |||||||||||||| |||||||| ||||| || | |||||| |||||||| |
|
|
| T |
4696005 |
agccaaacaactgcaaggaattggacaggtgcagtgaggcataggcctatactgatccaattcttcccataagcctcttaattcagtgaagtattcagta |
4696104 |
T |
|
| Q |
678 |
actttcttacttc----cttcaaattagctatttcttcttgcaactgagcaacacgaattctatctcctctcatgaatctatctttaagatcattccaca |
773 |
Q |
| |
|
|||||||| |||| ||||| ||| | ||||||| ||||| ||||| || | ||| | ||||||||||||||| | |||||| ||||||||||||| |
|
|
| T |
4696105 |
actttcttgcttccttgcttcagattggaaatttcttgctgcaattgagccactctaatacgatctcctctcatgaaacgatctttgagatcattccaca |
4696204 |
T |
|
| Q |
774 |
tatcaacaacattttctatgaatactacactttgagcaattgaaggagaaatagaattgattatccaagtataaacaagattattg |
859 |
Q |
| |
|
|||| | | |||| || ||||| || |||||||| |||||||| || ||||| ||||| ||||||||||||| ||||||||||||| |
|
|
| T |
4696205 |
tatccatagcattctcaatgaaaacaacactttgcgcaattgatggcgaaatcgaattaattatccaagtatgaacaagattattg |
4696290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 740 - 855
Target Start/End: Original strand, 13796301 - 13796416
Alignment:
| Q |
740 |
cctctcatgaatctatctttaagatcattccacatatcaacaacattttctatgaatactacactttgagcaattgaaggagaaatagaattgattatcc |
839 |
Q |
| |
|
||||||||||||| ||| |||||||| |||||||||||||||||||||| |||||| || || ||||||||||||| | ||||| ||||||||||| |
|
|
| T |
13796301 |
cctctcatgaatcaatccttaagatcgttccacatatcaacaacattttatatgaacacaacgctttgagcaattgtcgatgaaatttaattgattatct |
13796400 |
T |
|
| Q |
840 |
aagtataaacaagatt |
855 |
Q |
| |
|
| |||| ||||||||| |
|
|
| T |
13796401 |
atgtatgaacaagatt |
13796416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 424 - 466
Target Start/End: Original strand, 13795979 - 13796021
Alignment:
| Q |
424 |
tttcttgctgcattaccatagagaaaactctatttatttgagg |
466 |
Q |
| |
|
||||||| ||||||| |||||||||||| |||||||||||||| |
|
|
| T |
13795979 |
tttcttgttgcattatcatagagaaaaccctatttatttgagg |
13796021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 21 - 859
Target Start/End: Original strand, 31233391 - 31234233
Alignment:
| Q |
21 |
tttgcagagcctttagcttcaatgtttcttttctccaaaaatgcaatcaaattctgatactgatctttggtcagcatcattccattttcatcatttttcc |
120 |
Q |
| |
|
||||| || ||||||||||||| || ||| | ||||| |||||||||||||| ||||||||||| || || |||||||||||| |||||||||||||| |
|
|
| T |
31233391 |
tttgctgaacctttagcttcaacattgcttctttccaataatgcaatcaaattttgatactgatccttagttagcatcattccaccttcatcatttttcc |
31233490 |
T |
|
| Q |
121 |
tagtggaagcatttcccttgagctcagtttcttcactttccacaaaattagcattagcaaaagaatttcctcctcctcttccccaattaggagggtaacc |
220 |
Q |
| |
|
|| |||| |||| || ||| ||||||| |||||||| |||||||| |||||||||||||| |||||||| |||||||||||| | ||||| |
|
|
| T |
31233491 |
cagcagaagtgcttcctttagattcaacatcttcacaatccacaaagttagcatttgcaaaagaatttccacctcctctgccccaattaggaagctaacc |
31233590 |
T |
|
| Q |
221 |
atgtttcttataacaagtttccacaatgtgattagttctattacagaaactacacactctgagagtccctcttcctcttccttgaaaaccatttcctcta |
320 |
Q |
| |
|
||||||||| ||||| ||||| || |||||||||||||||||||||||||||||||| || || | |||| ||||||||||||||| ||||| |||| |
|
|
| T |
31233591 |
atgtttcttgtaacatgtttcaactgtgtgattagttctattacagaaactacacactatgggatttcctcctcctcttccttgaaatgaatttcttcta |
31233690 |
T |
|
| Q |
321 |
cctcttccaaattgtctctgaccatccatggcattcacaaaaccagaagttgtatcatctatagtagtaacaggtgatgatacgacactgtactgcgtct |
420 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| || || ||||||||||||||| | | || || ||||||||||| ||| | |||||| ||| |
|
|
| T |
31233691 |
cctcttccaaattgcctctgaccatccatggcattaactaagccagaagttgtatcacccaaagagatagttggtgatgatactacattatactgcatct |
31233790 |
T |
|
| Q |
421 |
tcgtttcttgctgcattaccatagagaaaactctatttatttgaggcaaatgatccattaataagacttgtgatgttacaccttgataatcttcatttaa |
520 |
Q |
| |
|
| ||||||||||||| |||||||||||||| |||||||| | ||| ||| ||||||| || || |||||||||||||| ||||||||||||||||| || |
|
|
| T |
31233791 |
ttctttcttgctgcataaccatagagaaaaccctatttatctaaggtaaaggatccatcaacaaaacttgtgatgttactccttgataatcttcattcaa |
31233890 |
T |
|
| Q |
521 |
acccatcaaaaatttgatgattctatcttctgctctaaaacttttgttatttctcatagccaaacaagtacattgaattgtacatgtgcattgaggtatt |
620 |
Q |
| |
|
||||||| ||| ||||||||| ||||||||||||||||| ||||||||| |||||||| ||||| ||||| ||||| ||| || |||||||| || |
|
|
| T |
31233891 |
tcccatcagaaacttgatgattatatcttctgctctaaaagctttgttattcctcatagctaaacatgtacaggcaattggacaagtacattgaggcata |
31233990 |
T |
|
| Q |
621 |
ggcctgtactgatccaattcctcccataaacctctcaaattagtgaaaaattcagtaactttctt----acttccttcaaattagctatttcttcttgca |
716 |
Q |
| |
|
|||| || ||||||||||||||||||||||||||||| | |||||||| |||||||||||||| ||| ||||||||| || |||||||| |||| |
|
|
| T |
31233991 |
cgcctatattgatccaattcctcccataaacctctcaattctgtgaaaaactcagtaactttcttgctaccttgcttcaaatttgcaatttcttcctgca |
31234090 |
T |
|
| Q |
717 |
actgagcaacacgaattctatctcctctcatgaatctatctttaagatcattccacatatcaacaacattttctatgaatactacactttgagcaattga |
816 |
Q |
| |
|
| ||||| || | ||||||||||||||||| |||||||||||| || |||||||||||||||| | |||||||||| || ||||||||||| |||||||| |
|
|
| T |
31234091 |
attgagctactctaattctatctcctctcacgaatctatcttttaggtcattccacatatcaatagcattttctataaacactacactttgcgcaattga |
31234190 |
T |
|
| Q |
817 |
aggagaaatagaattgattatccaagtataaacaagattattg |
859 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
31234191 |
aggtgaaatagaattgattatccaagtatgaacaagattattg |
31234233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 691 - 859
Target Start/End: Complemental strand, 23970489 - 23970322
Alignment:
| Q |
691 |
cttcaaattagctatttcttcttgcaactgagcaacacgaattctatctcctctcatgaatctatctttaagatcattccacatatcaacaacattttct |
790 |
Q |
| |
|
|||||| ||||| ||||||| ||||| || || || | |||||||||||||||||| || | ||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
23970489 |
cttcaagttagcaatttcttactgcaattgtgctactctaattctatctcctctcataaaacaatcct-aagatcattccacatatcaacaacattttct |
23970391 |
T |
|
| Q |
791 |
atgaatactacactttgagcaattgaaggagaaatagaattgattatccaagtataaacaagattattg |
859 |
Q |
| |
|
|| || || |||||||||||||| || ||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
23970390 |
ataaacacaacactttgagcaatagataacgaaatagaattgattatccgtgtatgaacaagattattg |
23970322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0102 (Bit Score: 151; Significance: 2e-79; HSPs: 1)
Name: scaffold0102
Description:
Target: scaffold0102; HSP #1
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 181 - 859
Target Start/End: Complemental strand, 3298 - 2613
Alignment:
| Q |
181 |
aagaatttcctcctcctcttccccaattaggagggtaaccatgtttcttataacaagtttccacaatgtgattagttctattacagaaactacacactct |
280 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||| | ||||| |||||||||||||| |||| ||||||| | || ||||||| |||| ||||| |
|
|
| T |
3298 |
aagaattacctcctcctctaccccaattaggaggaaagccatgcttcttataacaagtctccatggtgtgatttgaccttccacagaaattacaaactct |
3199 |
T |
|
| Q |
281 |
gagagtccctcttcctcttccttgaaaacca---tttcctctacctcttccaaattgtctctgaccatccatggcattcacaaaaccagaagttgtatca |
377 |
Q |
| |
|
| | ||||||||||||||||| |||||| |||||||| |||||||||||||| ||||| |||| | |||||||| || |||| | | ||||| |
|
|
| T |
3198 |
tccattgcctcttcctcttccttggaaaccagcatttcctcttcctcttccaaattgcctctgtgcatctacagcattcaccaatccagcactggtatcc |
3099 |
T |
|
| Q |
378 |
tctatagtagtaacaggtgatgatacgacactgtactgcgtcttcgtttcttgctgcattaccatagagaaaactctatttatttgaggcaaatgatcca |
477 |
Q |
| |
|
|||| | || | |||||| | | | || || || | |||| ||||||||||||| | |||||||||||||||||| ||||||||| | |||||| |
|
|
| T |
3098 |
tctacaacagaagcaggtgcagcaattataccatattgagccttcctttcttgctgcataatcatagagaaaactctattgatttgaggcgatggatcca |
2999 |
T |
|
| Q |
478 |
ttaataagacttgtgatgttacaccttgataatcttcatttaaacccatcaaaaatttgatgattctatcttctgctctaaaacttttgttatttctcat |
577 |
Q |
| |
|
||||||| ||||| ||||| |||| |||||| |||||||| || || |||| ||||| ||||||||||| ||| ||| |||| ||| ||| | ||| |
|
|
| T |
2998 |
ttaataaaacttgagatgtaacactttgatattcttcattcaacccaatcagaaattgaatgattctatcctctaatctgaaaccttttgcattacgcat |
2899 |
T |
|
| Q |
578 |
agccaaacaagtacattgaattgtacatgtgcattgaggtattggcctgtactgatccaattcctcccataaacctctcaaattagtgaaaaattcagta |
677 |
Q |
| |
|
|||||||||| | || |||||| ||| ||||| ||||| || |||||||||||||||||||| |||||||| ||||| || | |||||| |||||||| |
|
|
| T |
2898 |
agccaaacaactgcaaggaattgaacaggtgcagtgaggcataggcctgtactgatccaattcttcccataagcctcttaattcagtgaagtattcagta |
2799 |
T |
|
| Q |
678 |
actttcttacttc----cttcaaattagctatttcttcttgcaactgagcaacacgaattctatctcctctcatgaatctatctttaagatcattccaca |
773 |
Q |
| |
|
|||||||| |||| ||||| ||| | ||||||| |||||| ||||| || | ||| | ||||||||||||||| | |||||| ||||||||||||| |
|
|
| T |
2798 |
actttcttgcttccttgcttcagattggaaatttcttgttgcaattgagccactctaatacgatctcctctcatgaaacgatctttgagatcattccaca |
2699 |
T |
|
| Q |
774 |
tatcaacaacattttctatgaatactacactttgagcaattgaaggagaaatagaattgattatccaagtataaacaagattattg |
859 |
Q |
| |
|
|||| | | |||| || ||||| || |||||||| |||||||| || ||||| ||||| ||||||||||||| ||||||||||||| |
|
|
| T |
2698 |
tatccatagcattctcaatgaaaacaacactttgcgcaattgatggcgaaatcgaattaattatccaagtatgaacaagattattg |
2613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 7e-70; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 424 - 859
Target Start/End: Original strand, 23418975 - 23419414
Alignment:
| Q |
424 |
tttcttgctgcattaccatagagaaaactctatttatttgaggcaaatgatccattaataagacttgtgatgttacaccttgataatcttcatttaaacc |
523 |
Q |
| |
|
||||||||||||| | |||||||||||||||||| ||||||||||| ||||||||||||| ||||| ||||| |||| |||||| |||||||| || || |
|
|
| T |
23418975 |
tttcttgctgcataatcatagagaaaactctattgatttgaggcaatggatccattaataaaacttgagatgtaacactttgatattcttcattcaaccc |
23419074 |
T |
|
| Q |
524 |
catcaaaaatttgatgattctatcttctgctctaaaacttttgttatttctcatagccaaacaagtacattgaattgtacatgtgcattgaggtattggc |
623 |
Q |
| |
|
|||| ||||| ||||||||||| ||| ||| |||| ||| ||| | ||||||||||||| | || |||||| ||| ||||| ||||| || ||| |
|
|
| T |
23419075 |
aatcagaaattgaatgattctatcctctaatctgaaaccttttgcattacgcatagccaaacaactgcaaggaattggacaggtgcagtgaggcataggc |
23419174 |
T |
|
| Q |
624 |
ctgtactgatccaattcctcccataaacctctcaaattagtgaaaaattcagtaactttcttacttc----cttcaaattagctatttcttcttgcaact |
719 |
Q |
| |
|
|| |||||||||||||| |||||||| ||||| || | |||||| |||||||||||||||| |||| ||||| ||| | ||||||| ||||| | |
|
|
| T |
23419175 |
ctatactgatccaattcttcccataagcctcttaattcagtgaagtattcagtaactttcttgcttccttgcttcagattggaaatttcttgctgcaatt |
23419274 |
T |
|
| Q |
720 |
gagcaacacgaattctatctcctctcatgaatctatctttaagatcattccacatatcaacaacattttctatgaatactacactttgagcaattgaagg |
819 |
Q |
| |
|
|||| || | ||| | ||||||||||||||| | |||||| ||||||||||||||||| | | |||| || ||||| || |||||||| |||||||| || |
|
|
| T |
23419275 |
gagccactctaatacgatctcctctcatgaaacgatctttgagatcattccacatatccatagcattctcaatgaaaacaacactttgcgcaattgatgg |
23419374 |
T |
|
| Q |
820 |
agaaatagaattgattatccaagtataaacaagattattg |
859 |
Q |
| |
|
||||| ||||| ||||||||||||| ||||||||||||| |
|
|
| T |
23419375 |
cgaaatcgaattaattatccaagtatgaacaagattattg |
23419414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 392 - 559
Target Start/End: Original strand, 48156285 - 48156452
Alignment:
| Q |
392 |
aggtgatgatacgacactgtactgcgtcttcgtttcttgctgcattaccatagagaaaactctatttatttgaggcaaatgatccattaataagacttgt |
491 |
Q |
| |
|
|||||||||||| ||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| || |||||| |
|
|
| T |
48156285 |
aggtgatgatactacattgtactgtatctttctttcttgctgcattaccatagagaaaactctatttatttgaggtaaaggatccattaacaatacttgt |
48156384 |
T |
|
| Q |
492 |
gatgttacaccttgataatcttcatttaaacccatcaaaaatttgatgattctatcttctgctctaaa |
559 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
48156385 |
gatgttacaccttgataatcttcatttaaacccatcaaaaacttgatgattctatcttctgctctaaa |
48156452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 181 - 340
Target Start/End: Original strand, 23418729 - 23418891
Alignment:
| Q |
181 |
aagaatttcctcctcctcttccccaattaggagggtaaccatgtttcttataacaagtttccacaatgtgattagttctattacagaaactacacactct |
280 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||| | ||||| |||||||||||||| |||| ||||||| | || ||||||| |||| ||||| |
|
|
| T |
23418729 |
aagaattacctcctcctctaccccaattaggaggaaagccatgcttcttataacaagtctccatggtgtgatttgaccttccacagaaattacaaactct |
23418828 |
T |
|
| Q |
281 |
gagagtccctcttcctcttccttgaaaac---catttcctctacctcttccaaattgtctctg |
340 |
Q |
| |
|
| ||||||||||||||||| |||| |||||||||| |||||||||||||| ||||| |
|
|
| T |
23418829 |
tccgttgcctcttcctcttccttggaaaccagcatttcctcttcctcttccaaattgcctctg |
23418891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 424 - 859
Target Start/End: Original strand, 28583945 - 28584384
Alignment:
| Q |
424 |
tttcttgctgcattaccatagagaaaactctatttatttgaggcaaatgatccattaataagacttgtgatgttacaccttgataatcttcatttaaacc |
523 |
Q |
| |
|
||||||| |||||| |||||||||||| || |||||||||| ||| ||||||| | ||| || ||||||| ||||||||||||||||||||||| | |
|
|
| T |
28583945 |
tttcttgtcgcattatcatagagaaaaccctgcttatttgaggtaaaggatccataagtaatacatgtgatgcaacaccttgataatcttcatttaatca |
28584044 |
T |
|
| Q |
524 |
catcaaaaatttgatgattctatcttctgctctaaaacttttgttatttctcatagccaaacaagtacattgaattgtacatgtgcattgaggtattggc |
623 |
Q |
| |
|
||||||| | || ||||||||||| ||||||||| || ||| | ||| |||||||||| || |||||| |||||||||||||||||| || |
|
|
| T |
28584045 |
attcaaaaactgaattattctatcttcatctctaaaaccctttgcattgcgcattgccaaacaagcgcaaggaattggacatgtgcattgaggtataagc |
28584144 |
T |
|
| Q |
624 |
ctgtactgatccaattcctcccataaacctctcaaattagtgaaaaattcagtaa-ctttc---ttacttccttcaaattagctatttcttcttgcaact |
719 |
Q |
| |
|
| || ||||| || || |||||||| |||||||||| ||| || | | | || ||||| | ||| ||||||||| || |||| | |||||| | |
|
|
| T |
28584145 |
atatattgatcaaaatcttcccataatcctctcaaatcagtaaattaatatgaaatctttcgattcccttgcttcaaatttgcattttcctgttgcaatt |
28584244 |
T |
|
| Q |
720 |
gagcaacacgaattctatctcctctcatgaatctatctttaagatcattccacatatcaacaacattttctatgaatactacactttgagcaattgaagg |
819 |
Q |
| |
|
| || || | ||| | | | | |||||| || | ||||||||||||||||||||||||||||||||||||||| | || ||||| ||||||||||| || |
|
|
| T |
28584245 |
gtgctactctaatacgaccacatctcataaaacgatctttaagatcattccacatatcaacaacattttctatagagacaacactctgagcaattgacgg |
28584344 |
T |
|
| Q |
820 |
agaaatagaattgattatccaagtataaacaagattattg |
859 |
Q |
| |
|
|||| |||||||||||||| |||| ||||||||||||| |
|
|
| T |
28584345 |
tgaaacggaattgattatccaggtatgaacaagattattg |
28584384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 736 - 855
Target Start/End: Complemental strand, 13470764 - 13470648
Alignment:
| Q |
736 |
atctcctctcatgaatctatctttaagatcattccacatatcaacaacattttctatgaatactacactttgagcaattgaaggagaaatagaattgatt |
835 |
Q |
| |
|
||||||||||||||||| || ||||||||||| |||||||||||| ||||||||||| || ||||||||||||||||| || ||||| ||||||||| |
|
|
| T |
13470764 |
atctcctctcatgaatcggtccttaagatcatttcacatatcaaca---ttttctatgaacacaacactttgagcaattgacggtgaaattgaattgatt |
13470668 |
T |
|
| Q |
836 |
atccaagtataaacaagatt |
855 |
Q |
| |
|
||||| |||| ||||||||| |
|
|
| T |
13470667 |
atccaggtatgaacaagatt |
13470648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 1e-22; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 692 - 859
Target Start/End: Complemental strand, 37174880 - 37174713
Alignment:
| Q |
692 |
ttcaaattagctatttcttcttgcaactgagcaacacgaattctatctcctctcatgaatctatctttaagatcattccacatatcaacaacattttcta |
791 |
Q |
| |
|
||||||||||| || |||| || || |||||||| | ||| | ||| |||||||| || |||||||| | ||||||||||||||| | ||| ||||| |
|
|
| T |
37174880 |
ttcaaattagcaatctcttgatgtaattgagcaactctaatacgatcacctctcataaacctatctttcaaatcattccacatatctattgcatgttcta |
37174781 |
T |
|
| Q |
792 |
tgaatactacactttgagcaattgaaggagaaatagaattgattatccaagtataaacaagattattg |
859 |
Q |
| |
|
|||| |||||||| || ||||||||||| ||||| ||||| || |||||||||| ||||||||||||| |
|
|
| T |
37174780 |
tgaaaactacactgtgtgcaattgaaggggaaattgaattaataatccaagtatgaacaagattattg |
37174713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 761 - 845
Target Start/End: Complemental strand, 11660595 - 11660511
Alignment:
| Q |
761 |
agatcattccacatatcaacaacattttctatgaatactacactttgagcaattgaaggagaaatagaattgattatccaagtat |
845 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||| ||| | || |||||||||| |
|
|
| T |
11660595 |
agatcattccacatatctattccattttctatgaatactacactttgcgcaattgaaggagaaatcgaaataataatccaagtat |
11660511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 181 - 269
Target Start/End: Complemental strand, 37175416 - 37175328
Alignment:
| Q |
181 |
aagaatttcctcctcctcttccccaattaggagggtaaccatgtttcttataacaagtttccacaatgtgattagttctattacagaaa |
269 |
Q |
| |
|
|||||||||| ||||||||||||||||| || || |||||||| || |||||||||||||| ||| | ||||| ||||| | ||||||| |
|
|
| T |
37175416 |
aagaatttccacctcctcttccccaatttggtggataaccatgctttttataacaagtttcaacagtatgatttgttctttcacagaaa |
37175328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 472 - 652
Target Start/End: Complemental strand, 37175104 - 37174924
Alignment:
| Q |
472 |
gatccattaataagacttgtgatgttacaccttgataatcttcatttaaacccatcaaaaatttgatgattctatcttctgctctaaaacttttgttatt |
571 |
Q |
| |
|
||||||| ||||| || || || | ||| |||||||| |||||||| || || |||||||| | |||| |||||| ||||| ||||||| ||| ||| |
|
|
| T |
37175104 |
gatccatcaataaaacctgagaggctactccttgatattcttcattcaagccgatcaaaaactgtatgactctatcctctgccctaaaacctttagcatt |
37175005 |
T |
|
| Q |
572 |
tctcatagccaaacaagtacattgaattgtacatgtgcattgaggtattggcctgtactgatccaattcctcccataaacc |
652 |
Q |
| |
|
|||||||| | ||||||||| | || | ||| || |||||||| || || || || ||||||||||| ||||||||||| |
|
|
| T |
37175004 |
cctcatagcaagacaagtacagggcataggacaagtacattgaggcatgggtctatattgatccaattcttcccataaacc |
37174924 |
T |
|
Back To:
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Target: chr7 (Bit Score: 53; Significance: 6e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 691 - 859
Target Start/End: Complemental strand, 14232996 - 14232828
Alignment:
| Q |
691 |
cttcaaattagctatttcttcttgcaactgagcaacacgaattctatctcctctcatgaatctatctttaagatcattccacatatcaacaacattttct |
790 |
Q |
| |
|
|||||||||||| ||||| | ||||| |||||||| | ||||||||| |||||||| || | |||||| | ||||||||||||||| | |||||||| |
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|
| T |
14232996 |
cttcaaattagcaatttcctgctgcaattgagcaaccctaattctatcacctctcataaaacgatctttcaaatcattccacatatctatcgcattttct |
14232897 |
T |
|
| Q |
791 |
atgaatactacactttgagcaattgaaggagaaatagaattgattatccaagtataaacaagattattg |
859 |
Q |
| |
|
||||| ||||||||||| ||||| ||||| | ||| || || || ||| | |||| ||||||||||||| |
|
|
| T |
14232896 |
atgaagactacactttgtgcaatagaaggtgtaattgagttaataatcaatgtatgaacaagattattg |
14232828 |
T |
|
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Target: chr7; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 173 - 345
Target Start/End: Complemental strand, 14233518 - 14233343
Alignment:
| Q |
173 |
attagcaaaagaatttcctcctcctcttccccaattaggagggtaaccatgtttcttataacaagtttccacaatgtgattagttctattacagaaacta |
272 |
Q |
| |
|
||||||| | ||||||||||| ||||||||||| || |||||||| ||||| ||||| |||||||| ||||| ||||||||||||| | ||| || || |
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|
| T |
14233518 |
attagcataggaatttcctccacctcttccccagtttggagggtatccatgcttcttgtaacaagtatccactgtgtgattagttctttcacaaaaggta |
14233419 |
T |
|
| Q |
273 |
cacactctgagagtccctcttcctcttccttg---aaaaccatttcctctacctcttccaaattgtctctgaccat |
345 |
Q |
| |
|
|| | ||| | | ||||||||||||||||| ||| ||||||||||||||||| ||||| ||| | ||||||| |
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|
| T |
14233418 |
caaaatcttccattacctcttcctcttccttgagaaaacccatttcctctacctctgccaaactgtttttgaccat |
14233343 |
T |
|
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