View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16517_low_20 (Length: 336)
Name: NF16517_low_20
Description: NF16517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16517_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 24063417 - 24063109
Alignment:
| Q |
18 |
gtttggagatcatttaaagtctcaaattacattaaatctaccaacaaataaaatcagtacaaaaatagcaatatataccacaatagttaatcctttcaca |
117 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24063417 |
gtttggagatcatttaaagtctcaaatcacattaaatctaccaacaaataaaatcagtacaaaaatagcaatatataccacaatagttaatcctttcaca |
24063318 |
T |
|
| Q |
118 |
aagtatgctattgtaatcactccaataatcaatgccattgaagaaaaatggcatctatgcaagagaagacctgttagcattcttgttagaacatccattg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24063317 |
aagtatgctattgtaatcactccaataatcaatgccattgaggaaaaatggcatctatgcaagagaagacctgttagcattctcgttagaacatccattg |
24063218 |
T |
|
| Q |
218 |
tggtaagtagtgtaattgttgcactatttgttccattttttggatacattatggcttttattggtgctttcttgagtgtggcaatttcattgttgtttcc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24063217 |
tggtaagtagtgtaattgttgcactatttgttccattttttggatacattatggcttttattggtgctttcttgagtgtggcaatttcattgttgtttcc |
24063118 |
T |
|
| Q |
318 |
ttgcctttg |
326 |
Q |
| |
|
||||||||| |
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|
| T |
24063117 |
ttgcctttg |
24063109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 24016259 - 24015949
Alignment:
| Q |
18 |
gtttggagatcatttaaagtctcaaattacattaaatctaccaacaaataaaatcagtacaaaaatagcaatatataccacaatagttaatcctttcaca |
117 |
Q |
| |
|
|||||| |||||||| ||||||||||| |||||||||||||||||||||| ||| ||||||||| ||||||||||||||||| || | ||||||||||| |
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| T |
24016259 |
gtttggggatcatttgaagtctcaaatcacattaaatctaccaacaaatacaataagtacaaaattagcaatatataccacagtaataaatcctttcact |
24016160 |
T |
|
| Q |
118 |
aagtatgctattgtaatcactccaataatcaatgccattgaagaaaaatggcatctatgcaagagaagacctgttagcattcttgttagaacatccattg |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||| |
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|
| T |
24016159 |
aagtatgctattataatcactccaataatcaatgccattgaagaaaaatggcatctatgcaagagaagacctattagcattctcattagaacagccattg |
24016060 |
T |
|
| Q |
218 |
tggtaagtagtgtaattgttgcactatttgttccattttttggatacattatggcttttattggtgctttcttgagtgtggcaatttcattgttgtttcc |
317 |
Q |
| |
|
||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||| |
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| T |
24016059 |
tggtaagcagtgtctttgtggcactatttgttccattttttggatacattatggcttttattggtgcttttttgagtgtggcaatgtcatggttgtttcc |
24015960 |
T |
|
| Q |
318 |
ttgcctttgct |
328 |
Q |
| |
|
|||||| |||| |
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|
| T |
24015959 |
ttgcctctgct |
24015949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 24073886 - 24073576
Alignment:
| Q |
18 |
gtttggagatcatttaaagtctcaaattacattaaatctaccaacaaataaaatcagtacaaaaatagcaatatataccacaatagttaatcctttcaca |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| || | | ||||||||| |
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|
| T |
24073886 |
gtttggagatcatttaaagtctcaaatcacattaaatctaccaacaaataaaatcagtacaaaaatagcaatatatgccacagtaataactcctttcacc |
24073787 |
T |
|
| Q |
118 |
aagtatgctattgtaatcactccaataatcaatgccattgaagaaaaatggcatctatgcaagagaagacctgttagcattcttgttagaacatccattg |
217 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| | |||||||| | |||||| ||||| |
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|
| T |
24073786 |
aagtatgctatggtaatcactccaataatcaatgccattgaggacaaatggcatctatgcaagagaagacccttaagcattctcataagaacaagcattg |
24073687 |
T |
|
| Q |
218 |
tggtaagtagtgtaattgttgcactatttgttccattttttggatacattatggcttttattggtgctttcttgagtgtggcaatttcattgttgtttcc |
317 |
Q |
| |
|
| | || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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|
| T |
24073686 |
taatcagcagtgtaattgtggcactatttgttccattttttggatacattatggcttttattggtgctttcttgagcatggcaatgtcattgttgtttcc |
24073587 |
T |
|
| Q |
318 |
ttgcctttgct |
328 |
Q |
| |
|
|||| |||||| |
|
|
| T |
24073586 |
ttgcatttgct |
24073576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 21 - 328
Target Start/End: Complemental strand, 23245378 - 23245071
Alignment:
| Q |
21 |
tggagatcatttaaagtctcaaattacattaaatctaccaacaaataaaatcagtacaaaaatagcaatatataccacaatagttaatcctttcacaaag |
120 |
Q |
| |
|
||||||| |||| ||||| ||||| ||||||||| |||| | || | || ||||| ||||||||||| ||| |||| || |||||||||||||||| |
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|
| T |
23245378 |
tggagataatttgaagtcacaaatcacattaaatttacccataagcactataagtactaaaatagcaatctattccaccgtaattaatcctttcacaaaa |
23245279 |
T |
|
| Q |
121 |
tatgctattgtaatcactccaataatcaatgccattgaagaaaaatggcatctatgcaagagaagacctgttagcattcttgttagaacatccattgtgg |
220 |
Q |
| |
|
||||||||| | |||| ||||||| | ||| || || || |||||||||||||||| ||| | |||| |||||||| ||||||||||| | ||||| | |
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|
| T |
23245278 |
tatgctattcttatcagcccaataacaattgctatcgaggataaatggcatctatgcatgagcaaacctattagcattattgttagaacaacaattgtag |
23245179 |
T |
|
| Q |
221 |
taagtagtgtaattgttgcactatttgttccattttttggatacattatggcttttattggtgctttcttgagtgtggcaatttcattgttgtttccttg |
320 |
Q |
| |
|
| |||||||||||||| |||||||| |||| ||||||| ||||||||||| || |||||||| ||||||||||| ||||||||||||||||| ||||| |
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| T |
23245178 |
ttagtagtgtaattgtggcactattccttcccttttttgcgtacattatggccttcattggtgcattcttgagtgttgcaatttcattgttgttcccttg |
23245079 |
T |
|
| Q |
321 |
cctttgct |
328 |
Q |
| |
|
|||||||| |
|
|
| T |
23245078 |
cctttgct |
23245071 |
T |
|
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