View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16517_low_22 (Length: 297)
Name: NF16517_low_22
Description: NF16517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16517_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 11194186 - 11194468
Alignment:
| Q |
1 |
gacaccagacacactttcaatcagaaatatcagtactacgtagctctcattctacataaatgcgactcaaatgacaaaaggaacaggctaaaatcaattt |
100 |
Q |
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|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11194186 |
gacaccagacacgctttcaatcagaaatatcagtattacgtagctctcattctacataaatgcgactcaaatgacaaaaggaacaggctaaaatcaattt |
11194285 |
T |
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| Q |
101 |
taaaaaccttcttagcacgctttactgcaacaatggttccatccaagagtttggtcttgtagacagccccaaaaccaccttgaccaatcttgaaagaagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11194286 |
taaaaaccttcttagcacgctttactgcaacaatggttccatccaagagtttggtcttgtagacagccccaaaaccaccttgaccaatcttgaaagaagg |
11194385 |
T |
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| Q |
201 |
agagaagtttcttgtggcttggatgatttcctccatggtgtacttgacaatgccagactcattcccctggattgtgttgtata |
283 |
Q |
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| T |
11194386 |
agagaagtttcttgtggcttggatgatttcctccatggtgtacttgacaatgccagactcattcccctggattgtgttgtata |
11194468 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 30510178 - 30510220
Alignment:
| Q |
1 |
gacaccagacacactttcaatcagaaatatcagtactacgtag |
43 |
Q |
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| T |
30510178 |
gacaccagacacacttttgatcagaagtatcagtactacgtag |
30510220 |
T |
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