View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16517_low_23 (Length: 269)

Name: NF16517_low_23
Description: NF16517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16517_low_23
NF16517_low_23
[»] chr4 (22 HSPs)
chr4 (16-249)||(10218927-10219155)
chr4 (16-242)||(8176220-8176441)
chr4 (16-222)||(6333560-6333761)
chr4 (16-222)||(30193618-30193819)
chr4 (16-249)||(32136936-32137174)
chr4 (21-253)||(40899681-40899918)
chr4 (23-222)||(48996330-48996524)
chr4 (16-222)||(23937160-23937361)
chr4 (16-244)||(31301643-31301867)
chr4 (16-222)||(40806458-40806656)
chr4 (16-222)||(52344952-52345152)
chr4 (136-249)||(52345214-52345323)
chr4 (16-131)||(43630795-43630909)
chr4 (45-136)||(29639728-29639818)
chr4 (169-222)||(43630925-43630978)
chr4 (209-249)||(26477794-26477834)
chr4 (209-249)||(29640013-29640053)
chr4 (209-249)||(29643372-29643412)
chr4 (209-249)||(42558101-42558141)
chr4 (209-249)||(48996521-48996561)
chr4 (209-249)||(50570623-50570663)
chr4 (209-249)||(52345149-52345189)
[»] chr2 (18 HSPs)
chr2 (15-249)||(25297857-25298096)
chr2 (16-249)||(11376130-11376363)
chr2 (16-249)||(17916459-17916699)
chr2 (16-222)||(44979413-44979614)
chr2 (16-222)||(19936758-19936959)
chr2 (16-222)||(44035553-44035754)
chr2 (16-249)||(34910552-34910786)
chr2 (88-222)||(18360115-18360245)
chr2 (16-136)||(20420443-20420562)
chr2 (16-92)||(18357514-18357589)
chr2 (209-249)||(9811758-9811798)
chr2 (209-249)||(42785131-42785171)
chr2 (209-249)||(44035751-44035791)
chr2 (209-253)||(44085970-44086014)
chr2 (209-249)||(16579008-16579048)
chr2 (209-249)||(18360242-18360282)
chr2 (209-249)||(20420796-20420836)
chr2 (209-249)||(36412962-36413002)
[»] chr7 (28 HSPs)
chr7 (16-252)||(22366694-22366925)
chr7 (22-249)||(32823846-32824068)
chr7 (16-222)||(24360931-24361132)
chr7 (23-249)||(36921157-36921385)
chr7 (26-247)||(31876249-31876470)
chr7 (69-249)||(42910282-42910463)
chr7 (21-222)||(43429417-43429613)
chr7 (25-244)||(10069816-10070030)
chr7 (16-222)||(13852552-13852751)
chr7 (22-214)||(48675362-48675549)
chr7 (22-253)||(31982268-31982480)
chr7 (16-163)||(47903478-47903624)
chr7 (104-222)||(27054366-27054480)
chr7 (110-255)||(18672815-18672966)
chr7 (162-249)||(36509031-36509114)
chr7 (93-190)||(5932944-5933032)
chr7 (200-249)||(11206043-11206092)
chr7 (14-107)||(36508932-36509024)
chr7 (209-249)||(8768331-8768371)
chr7 (16-88)||(18672962-18673033)
chr7 (209-249)||(3211807-3211847)
chr7 (209-249)||(10672197-10672237)
chr7 (209-249)||(43429610-43429650)
chr7 (209-249)||(47070046-47070086)
chr7 (209-249)||(47204122-47204162)
chr7 (21-58)||(27054549-27054586)
chr7 (211-244)||(47903663-47903696)
chr7 (209-249)||(5933055-5933095)
[»] chr3 (16 HSPs)
chr3 (16-235)||(50562206-50562420)
chr3 (21-222)||(6004031-6004227)
chr3 (21-236)||(35531776-35531991)
chr3 (16-249)||(21586448-21586685)
chr3 (23-255)||(32880547-32880789)
chr3 (16-217)||(33002761-33002957)
chr3 (21-242)||(39098187-39098398)
chr3 (16-163)||(43030671-43030816)
chr3 (16-154)||(27641870-27642007)
chr3 (165-222)||(48032779-48032836)
chr3 (209-249)||(10369629-10369669)
chr3 (209-249)||(34794942-34794982)
chr3 (209-249)||(43030854-43030894)
chr3 (198-253)||(27641819-27641879)
chr3 (209-249)||(35401835-35401875)
chr3 (205-253)||(44651429-44651477)
[»] chr1 (18 HSPs)
chr1 (16-255)||(51252025-51252259)
chr1 (16-253)||(39256232-39256474)
chr1 (16-222)||(24910691-24910892)
chr1 (16-237)||(32954323-32954544)
chr1 (16-222)||(33910414-33910615)
chr1 (21-253)||(44918790-44919012)
chr1 (16-222)||(33474685-33474886)
chr1 (16-222)||(16529129-16529330)
chr1 (16-249)||(45692040-45692273)
chr1 (16-163)||(1160710-1160856)
chr1 (21-156)||(29389281-29389415)
chr1 (104-255)||(11899370-11899527)
chr1 (144-242)||(6722430-6722528)
chr1 (209-243)||(24910660-24910694)
chr1 (184-249)||(29390096-29390161)
chr1 (209-249)||(5154998-5155038)
chr1 (209-249)||(8211658-8211698)
chr1 (209-249)||(29707742-29707782)
[»] chr5 (33 HSPs)
chr5 (16-253)||(12680672-12680914)
chr5 (22-222)||(2226521-2226716)
chr5 (16-222)||(36103249-36103450)
chr5 (16-255)||(332876-333122)
chr5 (25-217)||(12165586-12165773)
chr5 (16-249)||(32520826-32521059)
chr5 (16-222)||(9161226-9161425)
chr5 (21-217)||(30265436-30265626)
chr5 (25-196)||(35893238-35893405)
chr5 (24-222)||(38433937-38434130)
chr5 (24-236)||(17084499-17084706)
chr5 (16-159)||(23780977-23781114)
chr5 (16-159)||(23867930-23868067)
chr5 (21-208)||(42544902-42545086)
chr5 (16-136)||(38334684-38334803)
chr5 (21-217)||(36176763-36176934)
chr5 (76-242)||(10174365-10174530)
chr5 (22-159)||(9988586-9988722)
chr5 (129-217)||(36176532-36176616)
chr5 (209-247)||(36103214-36103252)
chr5 (209-249)||(666933-666973)
chr5 (209-249)||(701585-701625)
chr5 (209-249)||(8409354-8409394)
chr5 (209-249)||(11917823-11917863)
chr5 (209-249)||(27885748-27885788)
chr5 (201-249)||(42545815-42545863)
chr5 (211-246)||(36176493-36176528)
chr5 (211-246)||(36176724-36176759)
chr5 (210-249)||(38334416-38334455)
chr5 (16-58)||(35893205-35893247)
chr5 (209-249)||(9161422-9161462)
chr5 (209-249)||(30002366-30002406)
chr5 (209-249)||(38434127-38434167)
[»] chr6 (12 HSPs)
chr6 (16-222)||(13801615-13801816)
chr6 (16-222)||(35039576-35039777)
chr6 (23-253)||(33550574-33550809)
chr6 (16-222)||(15859972-15860172)
chr6 (16-218)||(25137388-25137585)
chr6 (22-212)||(10591099-10591273)
chr6 (23-153)||(10390729-10390858)
chr6 (209-249)||(5866683-5866723)
chr6 (209-249)||(12270924-12270964)
chr6 (209-242)||(10390648-10390681)
chr6 (50-90)||(10494223-10494262)
chr6 (205-249)||(15837261-15837305)
[»] scaffold0059 (2 HSPs)
scaffold0059 (16-249)||(69136-69374)
scaffold0059 (109-249)||(77242-77388)
[»] chr8 (13 HSPs)
chr8 (16-249)||(18169632-18169865)
chr8 (16-249)||(18633198-18633431)
chr8 (16-222)||(36827430-36827631)
chr8 (23-249)||(14549478-14549705)
chr8 (22-253)||(3682169-3682399)
chr8 (16-222)||(30392324-30392524)
chr8 (16-222)||(10661392-10661593)
chr8 (22-249)||(36909949-36910165)
chr8 (24-217)||(33068844-33069032)
chr8 (121-249)||(44673068-44673206)
chr8 (115-222)||(6200574-6200677)
chr8 (209-249)||(3006233-3006273)
chr8 (209-249)||(5802557-5802597)
[»] scaffold0013 (2 HSPs)
scaffold0013 (16-222)||(128885-129087)
scaffold0013 (16-249)||(106278-106517)
[»] scaffold0029 (2 HSPs)
scaffold0029 (16-222)||(40212-40413)
scaffold0029 (50-222)||(47408-47575)
[»] scaffold0308 (1 HSPs)
scaffold0308 (209-249)||(5518-5558)


Alignment Details
Target: chr4 (Bit Score: 161; Significance: 6e-86; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 10218927 - 10219155
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  10218927 cataagcatgaaacaaattattgagaagtaaaagaaacaaattcatcactg-aaaatgaattgaaagagatggaaaggaattagaatcgaaccagatggt 10219025  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttgg 215  Q
    ||||||||||||||||| ||||||| | ||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10219026 gcaacaatggaaaaatctaatcaaatgagattattcttgagc----tatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttgg 10219121  T
Q  216 ttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    || |||   ||||||||||||| |||||||||||    
T  10219122 tttggtacttgagatgcaaaccgcaaaccaaacc 10219155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 8176441 - 8176220
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| |||||||||||||||||| |||| ||| |||| |||||||| |||| |||||||||| ||||||||||||||||||||| || ||||||||||||    
T  8176441 cataagcatgaaacaaattattgggaagaaaaagaaaaaaattcataactg-aaaatgaattaaaagagatggaaaggaattaggatcgaacctgatggt 8176343  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttgg 215  Q
    ||||||||||||||||||||||||||| ||||||| ||| ||    |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8176342 gcaacaatggaaaaatcgaatcaaaagagattatttttgggc----tatgtaattgggctagtacatgtttaagtaatcttcattattcttgcggtttgg 8176247  T
Q  216 ttcggttgctgagatgcaaaccacaaa 242  Q
    || ||||||||||||||||||| ||||    
T  8176246 tttggttgctgagatgcaaaccgcaaa 8176220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 6333560 - 6333761
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| |||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||    
T  6333560 cataagcatgaaacaaattattgggaagtaaaggaaacaaattcatcactggaaa-tgaattgaaagagatggaaatgaattagaatcgaacctgatggt 6333658  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttgg 215  Q
    ||||| |||||||||| |||||||||| ||||||||||||||    ||||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  6333659 gcaacgatggaaaaattgaatcaaaagagattattcttgagc----tatgtaattgggctagtacatatttaagtaatattcattattcttgcggtttag 6333754  T
Q  216 ttcggtt 222  Q
    || ||||    
T  6333755 tttggtt 6333761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 30193819 - 30193618
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| |||||||||||||||||| |||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||| ||| ||||||||||||    
T  30193819 cataagcatgaaacaaattattgggaagtaaaggaaacaaattcatcactgtaaa-tgaattgaaagagatggaaaggaattaaaatcgaacctgatggt 30193721  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttgg 215  Q
    |||||||||||||||||||||||||||  |||||||||||||||    |||||||||| || ||||| |||||||||||||||||||||||||||| |||    
T  30193720 gcaacaatggaaaaatcgaatcaaaagaaattattcttgagcta----tgtaattgggataatacatatttaagtaatattcattattcttgcggtatgg 30193625  T
Q  216 ttcggtt 222  Q
    || ||||    
T  30193624 tttggtt 30193618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 32136936 - 32137174
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| ||||||||||||| |||| |||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| ||| ||||||||||||    
T  32136936 cataagcatgaaacaaatgattgggaagtaaaggaaacaaattcatcacttgaaa-tgaattgaaagagatggaaaggaattaaaatcgaacctgatggt 32137034  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcgg----- 210  Q
    ||||||||| ||||||||||| |||||  ||||||||| |||    |||||||||||||||||||||||||||||||||||||| ||||||| ||         
T  32137035 gcaacaatgaaaaaatcgaataaaaagaaattattcttaagc----tatgtaattgggctagtacatgtttaagtaatattcatcattcttgtggtttgg 32137130  T
Q  211 -----tttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
         ||||||||||||||||||||||||||| |||||||||||    
T  32137131 tttgatttggttcggttgctgagatgcaaaccgcaaaccaaacc 32137174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 21 - 253
Target Start/End: Complemental strand, 40899918 - 40899681
Alignment:
Q  21 gcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggtgcaac 120  Q
    ||||||| ||||||||||  ||||||| |||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||  ||||||||||||    
T  40899918 gcatgaatcaaattattggtaagtaaaggaaataaattcatcactggaaa-tgaatttaaagagatggaaaggaattagaattgaatttgatggtgcaac 40899820  T
Q  121 aatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgc----------gg 210  Q
    |||||||||||||||||||||| |||||| |||| ||    ||||||||||||||| ||||||||||||||| |||||||||||||||          ||    
T  40899819 aatggaaaaatcgaatcaaaagagattatccttgggc----tatgtaattgggctattacatgtttaagtaacattcattattcttgcggtttggtttgg 40899724  T
Q  211 tttggttcggttgctgagatgcaaaccacaaaccaaaccaaac 253  Q
    ||||||||||||||||||||||||||| |||||| ||||||||    
T  40899723 tttggttcggttgctgagatgcaaaccgcaaaccgaaccaaac 40899681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 23 - 222
Target Start/End: Original strand, 48996330 - 48996524
Alignment:
Q  23 atgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggtgcaacaa 122  Q
    ||||||||||||||||||||| |||||||||||||| ||||||| ||||| ||||||||||| ||||||||||||||||| |||  ||||||||||||||    
T  48996330 atgaaacaaattattgagaagaaaatgaaacaaatttatcactg-aaaataaattgaaagaggtggaaaggaattagaatcgaatttgatggtgcaacaa 48996428  T
Q  123 tggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttggttcggtt 222  Q
    || ||||||||||||||||| ||||||||||  ||    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  48996429 tgaaaaaatcgaatcaaaagagattattcttaggc----tatgtaattaggctagtacatgtttaagtaatattcattattcttgcggtttggtttggtt 48996524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 23937361 - 23937160
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| |||||||||||||||||| ||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| |||||||    
T  23937361 cataagcatgaaacaaattattgggaaataaatgaaacaaattcatcactagaaa-tgaattgaaagagatggaaaggaattagaatagaacatgatggt 23937263  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttgg 215  Q
    ||||||||||||||||| |||| |||| |||||||||||||     ||||||||||| |||||| |||||||||||||||| |||||||||||||||| |    
T  23937262 gcaacaatggaaaaatcaaatctaaagagattattcttgag----ttatgtaattggactagtatatgtttaagtaatatttattattcttgcggtttag 23937167  T
Q  216 ttcggtt 222  Q
    || ||||    
T  23937166 tttggtt 23937160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 31301643 - 31301867
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| ||||||||||||||||||  ||| ||| |||||||||||||||||||||| ||||||||| |||||||||| |||||||||| ||| ||||||||    
T  31301643 cataagcatgaaacaaattattggaaagaaaaggaaacaaattcatcactggaaa-tgaattgaaggagatggaaatgaattagaatcgaaactgatggt 31301741  T
Q  116 gcaacaatggaaaaatcgaat-caaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttg 214  Q
    ||||||||| |||| ||||||  ||||   ||||||||||||     ||||||||||||||| |||| |||||||||||||| |||||||||||||||||    
T  31301742 gcaacaatgaaaaagtcgaataaaaaaaaaattattcttgag----ttatgtaattgggctaatacaagtttaagtaatattgattattcttgcggtttg 31301837  T
Q  215 gttcggttgctgagatgcaaaccacaaacc 244  Q
    ||||||||||||||||||||||| ||||||    
T  31301838 gttcggttgctgagatgcaaaccgcaaacc 31301867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 40806656 - 40806458
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| ||||||||||||||||||  ||||||| |||||||||| |||| |||||| ||||||||||||||||||||||||||||||| ||||||| ||      
T  40806656 cataagcatgaaacaaattattggaaagtaaaggaaacaaatttatcattggaaa-tgaattgaaagagatggaaaggaattagaatcgaacctgttg-- 40806560  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttgg 215  Q
     |||||||| ||||||||||||||||| ||||||||||||||||||||    |||| |||||||||| ||||||||||||||||||||||||||||||||    
T  40806559 -caacaatgaaaaaatcgaatcaaaagagattattcttgagctatgta----attgagctagtacatatttaagtaatattcattattcttgcggtttgg 40806465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 52344952 - 52345152
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| ||||||||||||||||||  ||||||| ||||||||||||||| || || |||||||||||||| ||||||  | ||||||| |||||||||| |    
T  52344952 cataagcatgaaacaaattattggaaagtaaaggaaacaaattcatcagtg-aatatgaattgaaagagttggaaataagttagaatcgaacctgatg-t 52345049  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttgg 215  Q
    |||| |||||||||||| ||||||||| || ||||||||||||||| |    || || ||||||||||||||||||||||||||||||||||||||||||    
T  52345050 gcaataatggaaaaatcaaatcaaaagcgactattcttgagctatgca----atcggactagtacatgtttaagtaatattcattattcttgcggtttgg 52345145  T
Q  216 ttcggtt 222  Q
    || ||||    
T  52345146 tttggtt 52345152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 136 - 249
Target Start/End: Original strand, 52345214 - 52345323
Alignment:
Q  136 tcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttggttcggttgctgagatgcaaa 235  Q
    ||||||| || ||||||||||||||| |    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52345214 tcaaaagcgactattcttgagctatgca----attgggctagtacatgtttaagtaatattcattattcttgcggtttggttcggttgctgagatgcaaa 52345309  T
Q  236 ccacaaaccaaacc 249  Q
    ||||||||| ||||    
T  52345310 ccacaaaccgaacc 52345323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 131
Target Start/End: Original strand, 43630795 - 43630909
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| |||||||||||||||||| |||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||| | |||||    
T  43630795 cataagcatgaaacaaattattgggaagtaaaggaaacaaattcatcactgcaaa-tgaattgaaagagatggaaaggaattagaatcgaacttaatggt 43630893  T
Q  116 gcaacaatggaaaaat 131  Q
    ||||||||| ||||||    
T  43630894 gcaacaatgaaaaaat 43630909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 45 - 136
Target Start/End: Original strand, 29639728 - 29639818
Alignment:
Q  45 aaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggtgcaacaatggaaaaatcgaat 136  Q
    ||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  29639728 aaatgaaacaaattcatcattggaaa-tgaattgaaggagatggaaaggaattagaatcgaacctgatgatgcaacaatggaaaaatcgaat 29639818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 43630925 - 43630978
Alignment:
Q  169 ttgggctagtacatgtttaagtaatattcattattcttgcggtttggttcggtt 222  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||| ||||    
T  43630925 ttgggctattacatttttaagtaatattcattattcttgcggtttggtttggtt 43630978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 26477834 - 26477794
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  26477834 ggtttggttcggttgctgagatgcaaaccgcaaaccaaacc 26477794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 29640013 - 29640053
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  29640013 ggtttggttcggttgctgagatgcaaaccgcaaaccgaacc 29640053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 29643412 - 29643372
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    |||||||||||||||||||||||||| ||||||||| ||||    
T  29643412 ggtttggttcggttgctgagatgcaagccacaaaccgaacc 29643372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 42558101 - 42558141
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  42558101 ggtttggttcggttgctgagatgcaaaccgcaaaccgaacc 42558141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 48996521 - 48996561
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  48996521 ggtttggttcggttgctgagatgcaaaccgcaaatcaaacc 48996561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 50570663 - 50570623
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  50570663 ggtttggttcggttgctgagatgcaaaccgcaaaccgaacc 50570623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 52345149 - 52345189
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  52345149 ggtttggttcggttgctgagatgcaaaccgcaaaccgaacc 52345189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 161; Significance: 6e-86; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 15 - 249
Target Start/End: Complemental strand, 25298096 - 25297857
Alignment:
Q  15 gcataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatgg 114  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||| |||||||||||    
T  25298096 gcataagcatgaaacaaattattgggaagtaaatgaaacaaattcatcactggaaa-taaattgaaagagatggaaagaaattagaatcgaacctgatgg 25297998  T
Q  115 tgcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgc------ 208  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||          
T  25297997 tgcaacaatggaaaaatcgaatcaaaagcgattattcttgagcta----tgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttg 25297902  T
Q  209 ----ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
        |||||||||||||||||||||||||||||||||||||||||    
T  25297901 gtttggtttggttcggttgctgagatgcaaaccacaaaccaaacc 25297857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 11376130 - 11376363
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| |||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  11376130 cataagcatgaaacaaattattgggaagtaaaggaaacaaattcatcactggaaa-tgaattgaaagagatggaaaggaattagaatcgaacctgatggt 11376228  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttgg 215  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||| |    |||| |||||||||||||||||||||||||| ||||||||||||||||    
T  11376229 gcaacaatggaaaaatcgaatcaaaagcgattattcttgggctatgca----attgagctagtacatgtttaagtaatattcagtattcttgcggtttgg 11376324  T
Q  216 ttcggtt-----gctgagatgcaaaccacaaaccaaacc 249  Q
    || ||||     ||||||||||||||  |||||| ||||    
T  11376325 tttggttcagttgctgagatgcaaactgcaaaccgaacc 11376363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 17916699 - 17916459
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacct--gatg 113  Q
    |||| |||||||||||||||||  ||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||  ||||    
T  17916699 cataagcatgaaacaaattatttggaagtaaagaaaacaaattcatcactggaaa-tgaattgaaagagatggaaaggaattataatcgaacctctgatg 17916601  T
Q  114 gtgcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggttt 213  Q
    |||||| ||||||||||  |||||||||| ||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||    
T  17916600 gtgcaataatggaaaaaatgaatcaaaagagattattcttgagctatgta----attgggctagtacatgtttaagtaatattcattattcttgcggttt 17916505  T
Q  214 ggt----------tcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    |||          |||||||||||||||||||||||||||||||||    
T  17916504 ggtttggtttggctcggttgctgagatgcaaaccacaaaccaaacc 17916459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 44979614 - 44979413
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| ||||||| ||||||||||  ||| ||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||    
T  44979614 cataagcatgaagcaaattattggaaagaaaaggaaacaaattcatcactggaaa-tgaattaaaagagatggaaaggaattagaattgaacctcatggt 44979516  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttgg 215  Q
    ||||||||||||||||||||||||||| |||||||| || ||    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  44979515 gcaacaatggaaaaatcgaatcaaaagagattattcctgggc----tatgtaattgggctagtacatgtttaagtaacattcattattcttgcggtttgg 44979420  T
Q  216 ttcggtt 222  Q
    || ||||    
T  44979419 tttggtt 44979413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 19936959 - 19936758
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| |||||||||||||||||| |||||||| |||||||||||| ||||||||| ||||||||| ||||||||||| ||||||||| |||| |||||||    
T  19936959 cataagcatgaaacaaattattgggaagtaaaggaaacaaattcagcactggaaa-tgaattgaatgagatggaaagaaattagaatcgaacatgatggt 19936861  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttgg 215  Q
    ||||||||| ||||||||||||||||   ||||||||||||||||||||    ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  19936860 gcaacaatgaaaaaatcgaatcaaaatatattattcttgagctatgtat----ttgagctagtacatgtataagtaatattcattattcttgcggtttgg 19936765  T
Q  216 ttcggtt 222  Q
    || ||||    
T  19936764 tttggtt 19936758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 44035553 - 44035754
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| ||| |||||||| ||||  |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||| ||    
T  44035553 cataagcaagaaacaaaatatttggaagtaaaggaaacaaattcatcactggaaa-tgaattgaaagagatggaaaggaattagaatcgaacttgatcgt 44035651  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttgg 215  Q
    ||||||||| ||||||||||||||||| |||||||||||||     ||||||| || ||||||||||||||||||||||||||||||| |||||||||||    
T  44035652 gcaacaatgaaaaaatcgaatcaaaagagattattcttgag----ttatgtaactgagctagtacatgtttaagtaatattcattatttttgcggtttgg 44035747  T
Q  216 ttcggtt 222  Q
    || ||||    
T  44035748 tttggtt 44035754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 34910552 - 34910786
Alignment:
Q  16 cataggcatgaaacaaattattgagaa-gtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatgg 114  Q
    |||| |||||||||||||||||| ||| | ||| |||||||||||||||| | |||||||||||| ||| ||| ||| |||||||||| |||| ||||||    
T  34910552 cataagcatgaaacaaattattgggaaagaaaaggaaacaaattcatcacag-aaaatgaattgagagaaatgaaaacgaattagaatcgaacttgatgg 34910650  T
Q  115 tgcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttg 214  Q
    ||||||||||||||||||||||||||||  |||||||||| ||    |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  34910651 tgcaacaatggaaaaatcgaatcaaaagatattattcttgggc----tatgtaattgggttagtacatgtttaagtaatattcattattcttgcggtttg 34910746  T
Q  215 g-----ttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    |     |||||||||| |||| ||||||  ||||||||||    
T  34910747 gtttgtttcggttgctcagattcaaaccgtaaaccaaacc 34910786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 18360115 - 18360245
Alignment:
Q  88 gaaaggaattagaattgaacctgatggtgcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgttta 187  Q
    ||||| ||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||| | | ||    |||||||||||||||||||| |||||    
T  18360115 gaaagaaattagaatcgaacatgatggtgcaacaatggaaaaatcgaatcaaaagagattattttcgggc----tatgtaattgggctagtacaagttta 18360210  T
Q  188 agtaatattcattattcttgcggtttggttcggtt 222  Q
    ||||||||| |||||||||||||||||||| ||||    
T  18360211 agtaatattgattattcttgcggtttggtttggtt 18360245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 20420443 - 20420562
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| ||||||| |||||||||| |||| ||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||  ||||||||| |    
T  20420443 cataagcatgaatcaaattattgggaagaaaatgaaacaaattcatcattggaaa-tgaattgaaggagatggaaaggaattagaatcaaacctgatgat 20420541  T
Q  116 gcaacaatggaaaaatcgaat 136  Q
    |||||||||||||||||||||    
T  20420542 gcaacaatggaaaaatcgaat 20420562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 18357514 - 18357589
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaag 92  Q
    |||| |||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||  ||||||||||    
T  18357514 cataagcatgaaacaaattattgggaagaaaatgaaacaaattcatcactgg-aaatgaattgaagaagatggaaag 18357589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 9811758 - 9811798
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  9811758 ggtttggttcggttgctgagatgcaaaccgcaaaccgaacc 9811798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 42785171 - 42785131
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    |||||||||||||| |||||||||||||| |||||||||||    
T  42785171 ggtttggttcggtttctgagatgcaaaccgcaaaccaaacc 42785131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 44035751 - 44035791
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    |||||||||||||||||||||||||||||  ||||||||||    
T  44035751 ggtttggttcggttgctgagatgcaaaccgtaaaccaaacc 44035791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 44085970 - 44086014
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaaccaaac 253  Q
    ||||||||||||||| ||| ||| |||||||||||||||||||||    
T  44085970 ggtttggttcggttggtgaaatgaaaaccacaaaccaaaccaaac 44086014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 16579008 - 16579048
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    |||||||||| |||||||||||||||||| |||||| ||||    
T  16579008 ggtttggttcagttgctgagatgcaaaccgcaaaccgaacc 16579048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 18360242 - 18360282
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||||||||||||||||||||   ||||||||||    
T  18360242 ggtttggttcggttgctgagatgcaaactgtaaaccaaacc 18360282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 20420796 - 20420836
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||| ||||||||||||||||| |||||| ||||    
T  20420796 ggtttggttcgattgctgagatgcaaaccgcaaaccgaacc 20420836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 36413002 - 36412962
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||| ||||||||||||||||| |||||| ||||    
T  36413002 ggtttggttcgattgctgagatgcaaaccgcaaaccgaacc 36412962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 22366694 - 22366925
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| |||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  22366694 cataagcatgaaacaaattattgggaagtaaaggaaacaaattcatcactggaaa-tgaattgaaagagatggaaaggaattagaatcgaacctgatggt 22366792  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttgg 215  Q
    ||||||||||||||| |||||  |||| ||||||||||||||    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  22366793 gcaacaatggaaaaaccgaattgaaagagattattcttgagc----tatgtaattgggctagtacatgtttgagtaatattcattattcttgcggtttgg 22366888  T
Q  216 ttcggttgctgagatgcaaaccacaaaccaaaccaaa 252  Q
    || ||||||| ||||||||||| |||||| |||||||    
T  22366889 tttggttgctaagatgcaaaccgcaaaccgaaccaaa 22366925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 22 - 249
Target Start/End: Original strand, 32823846 - 32824068
Alignment:
Q  22 catgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggtgcaaca 121  Q
    |||||| ||||||||||  ||||||||||||||||||||||| || | |||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  32823846 catgaagcaaattattggaaagtaaatgaaacaaattcatcagtg-agaatgaattgaaatagatggaaaggaattagaatcgaacctgatggtgcaaca 32823944  T
Q  122 atggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttggttcggt 221  Q
    ||||||||||||||||||| | ||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||    
T  32823945 atggaaaaatcgaatcaaaggagattattcttgagc----tatgtaattgggctagtacatgtttaagtaatattcattattcatgcggtttggtttggt 32824040  T
Q  222 tgctgagatgcaaaccacaaaccaaacc 249  Q
    |||||||||||||||| |||||| ||||    
T  32824041 tgctgagatgcaaaccgcaaaccgaacc 32824068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 24361132 - 24360931
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| |||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||    
T  24361132 cataagcatgaaacaaattattgggaagtaaaggaaacaaattcatcactggaaa-tgaattgaaagaaatggaaaggaattagaattgaacttgatggt 24361034  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttgg 215  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  24361033 gcaacaatgaaaaaatcgaatcaaaagggattattcttgagcta----tgtaattgggctagtacatatttaagtaatagtcattattcttgcggtttgg 24360938  T
Q  216 ttcggtt 222  Q
    || ||||    
T  24360937 tttggtt 24360931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 23 - 249
Target Start/End: Complemental strand, 36921385 - 36921157
Alignment:
Q  23 atgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggtgcaacaa 122  Q
    |||||||||||||||| |||||||| |||||||||| |||| || |||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  36921385 atgaaacaaattattgggaagtaaaagaaacaaatttatcattg-aaaatgaattgaaagagatggaaaagaattagaatcgaacctgatggtgcaacaa 36921287  T
Q  123 tggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggc--tagtacatgtttaagtaatattcattattcttgcggttt-----gg 215  Q
    || ||||||||||||||||| ||||||||||||||||||||    ||||||   |||||||||||||||||||||||||||||||||||||||     ||    
T  36921286 tgaaaaaatcgaatcaaaagcgattattcttgagctatgta----attgggggttagtacatgtttaagtaatattcattattcttgcggtttggtttgg 36921191  T
Q  216 ttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    |||||||||||||||||||||  |||||||||||    
T  36921190 ttcggttgctgagatgcaaactgcaaaccaaacc 36921157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 26 - 247
Target Start/End: Complemental strand, 31876470 - 31876249
Alignment:
Q  26 aaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggtgcaacaatgg 125  Q
    ||||||||||||  |||||||| |||||||| ||||||||||||| |||||| ||||||||||||| |||||||||| ||| ||||||||||||||||||    
T  31876470 aaacaaattatttggaagtaaaggaaacaaagtcatcactggaaa-tgaattaaaagagatggaaaagaattagaatcgaatctgatggtgcaacaatgg 31876372  T
Q  126 aaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgc-----ggtttggttcgg 220  Q
    ||||||||||| ||||| ||||||||||||||||    ||||| |||||||||||||||||||||||||||||||||| ||||     ||||||||| ||    
T  31876371 aaaaatcgaattaaaagagattattcttgagcta----tgtaactgggctagtacatgtttaagtaatattcattatttttgcggtttggtttggtttgg 31876276  T
Q  221 ttgctgagatgcaaaccacaaaccaaa 247  Q
    ||||||||||||||||| |||||||||    
T  31876275 ttgctgagatgcaaaccgcaaaccaaa 31876249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 69 - 249
Target Start/End: Complemental strand, 42910463 - 42910282
Alignment:
Q  69 aaatgaattgaaagagatggaaaggaattagaattgaacctgatggtgcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaa 168  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    |||||    
T  42910463 aaatgaattgaaagagatggaaaggaattagaatcggacctgatggtgcaacaatggaaaaatcaaatcaaaagagattattcttgagcta----tgtaa 42910368  T
Q  169 ttgggctagtacatgtttaagtaatattcattattcttgc-----ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||| |||||| ||||    
T  42910367 ttgggctagtacatgtttaagtaatattcattattcttgcggtttggtttggttcggttgctgagatgcaaaccgcaaaccgaacc 42910282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 43429417 - 43429613
Alignment:
Q  21 gcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggtgcaac 120  Q
    ||||||||| ||||||||  ||||||| ||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  43429417 gcatgaaactaattattggaaagtaaaggaaacaaattcatcattggaaa-tgaatcgaaagagatggaaaggaattagaattgaacctgatggtgcaac 43429515  T
Q  121 aatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttggttcgg 220  Q
    |||||||||||||||||||||| |||| |||||||||    ||||||||||| | |||||| |||||||||||| |||||||||||||||||||||| ||    
T  43429516 aatggaaaaatcgaatcaaaagagatttttcttgagc----tatgtaattggacgagtacacgtttaagtaatagtcattattcttgcggtttggtttgg 43429611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 25 - 244
Target Start/End: Original strand, 10069816 - 10070030
Alignment:
Q  25 gaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggtgcaacaatg 124  Q
    |||||||||||||| |||| ||| ||||||||||||||| |||||| ||||||||| |||||||||||||||||||||  ||||||||||||||||||||    
T  10069816 gaaacaaattattgggaagaaaaggaaacaaattcatcattggaaa-tgaattgaaggagatggaaaggaattagaatcaaacctgatggtgcaacaatg 10069914  T
Q  125 gaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttggttcggttgc 224  Q
    |||||||| ||||||||  ||||||||||| ||    |||||||||||||  ||||| |||||||||||||| |||||||||||||||||||| ||||||    
T  10069915 gaaaaatcaaatcaaaaaagattattcttgggc----tatgtaattgggccggtacaagtttaagtaatattgattattcttgcggtttggtttggttgc 10070010  T
Q  225 tgagatgcaaaccacaaacc 244  Q
    ||||||||||| | ||||||    
T  10070011 tgagatgcaaatcgcaaacc 10070030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 13852552 - 13852751
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| ||||||||||||||||||  ||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||| ||| ||||||||||||    
T  13852552 cataagcatgaaacaaattattggaaagtaaaggaaacaaattcatcactgtaaa-tgaattgaaagagatggaaaggaattataatcgaacctgatggt 13852650  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttgg 215  Q
      ||||||| ||||||||||||||||| ||||||||||||||    |||||||||| | |||||||| ||||| ||||||||||||||||||| ||||||    
T  13852651 --aacaatgaaaaaatcgaatcaaaagagattattcttgagc----tatgtaattgagttagtacatatttaaataatattcattattcttgcagtttgg 13852744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 22 - 214
Target Start/End: Original strand, 48675362 - 48675549
Alignment:
Q  22 catgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggtgcaaca 121  Q
    ||||||||||||||||  |||||||| |||||||||||||||||| |||||||||| ||||||||||||| ||||||||||  |||||||||||||||||    
T  48675362 catgaaacaaattattaggaagtaaaggaaacaaattcatcactg-aaaatgaattcaaagagatggaaatgaattagaatcaaacctgatggtgcaaca 48675460  T
Q  122 atggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttg 214  Q
    |||||| |||| || |||||| | ||||| || |||    ||||||||| ||||| ||||||||||||||||||| ||||||||| |||||||    
T  48675461 atggaataatcaaaccaaaagaggttattttttagc----tatgtaattaggctaatacatgtttaagtaatatttattattcttacggtttg 48675549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 22 - 253
Target Start/End: Complemental strand, 31982480 - 31982268
Alignment:
Q  22 catgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggtgcaaca 121  Q
    ||||||||||||||||| |||| ||| ||||||||||||||||| ||||||||              |||||||||||||| |||  |||||||||||||    
T  31982480 catgaaacaaattattgggaagaaaaggaaacaaattcatcact-gaaaatga--------------aaaggaattagaatcgaatttgatggtgcaaca 31982396  T
Q  122 atggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttggttcggt 221  Q
    ||||||||||| ||||||||| ||||||||||| ||    |||||||||||||| |||||  ||||||||||||| |||||| ||||||||||||| |||    
T  31982395 atggaaaaatcaaatcaaaagagattattcttgggc----tatgtaattgggctggtacaaatttaagtaatattgattatttttgcggtttggtttggt 31982300  T
Q  222 tgctgagatgcaaaccacaaaccaaaccaaac 253  Q
    |||| ||||||||||| |||| ||||||||||    
T  31982299 tgctaagatgcaaaccgcaaatcaaaccaaac 31982268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 47903478 - 47903624
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| |||||||||||||||||| ||| |||| |||||||||||||||||||||| |||||||||||| ||||||| |||||| ||| ||||||||||||    
T  47903478 cataagcatgaaacaaattattgggaaataaaggaaacaaattcatcactggaaa-tgaattgaaagatatggaaatgaattataatcgaacctgatggt 47903576  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgta 163  Q
    ||||||||| |||||||||||| |||   | |||||||||||||||||    
T  47903577 gcaacaatgaaaaaatcgaatcgaaaaatagtattcttgagctatgta 47903624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 104 - 222
Target Start/End: Complemental strand, 27054480 - 27054366
Alignment:
Q  104 gaacctgatggtgcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattatt 203  Q
    |||| |||||||||||||||| ||||||||||||||||| |||||||||||||     ||||||||||||||||||||| ||||||||||||||||||||    
T  27054480 gaacatgatggtgcaacaatgaaaaaatcgaatcaaaagagattattcttgag----ttatgtaattgggctagtacatatttaagtaatattcattatt 27054385  T
Q  204 cttgcggtttggttcggtt 222  Q
    |||| ||||||||| ||||    
T  27054384 cttgtggtttggtttggtt 27054366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 110 - 255
Target Start/End: Complemental strand, 18672966 - 18672815
Alignment:
Q  110 gatggtgcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcg 209  Q
    |||||||||||||| |||||||| ||||||||| |||||||| || ||||||||    |||||||||||||| |||||||||||||| |||||| |||||    
T  18672966 gatggtgcaacaatagaaaaatctaatcaaaagagattattcctgtgctatgta----attgggctagtacaagtttaagtaatattgattattattgcg 18672871  T
Q  210 gttt----------ggttcggttgctgagatgcaaaccacaaaccaaaccaaactg 255  Q
    ||||          ||||||||||||||||||||||||||||||| |||| |||||    
T  18672870 gtttggtttggtttggttcggttgctgagatgcaaaccacaaaccgaaccgaactg 18672815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 162 - 249
Target Start/End: Original strand, 36509031 - 36509114
Alignment:
Q  162 tatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    |||||||||||||| |||||  ||||||||||||| |||||||||||||||||||||| |||||||    |||||| |||||||||||    
T  36509031 tatgtaattgggctcgtacaaatttaagtaatattgattattcttgcggtttggttcgattgctga----caaaccgcaaaccaaacc 36509114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 190
Target Start/End: Original strand, 5932944 - 5933032
Alignment:
Q  93 gaattagaattgaacctgatggtgcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagt 190  Q
    ||||||||||  || ||||||||||||||||||||||||||||     || ||||||||||||||||||    |||||||||||||||||||||||||    
T  5932944 gaattagaatcaaatctgatggtgcaacaatggaaaaatcgaa-----agagattattcttgagctatg----taattgggctagtacatgtttaagt 5933032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 11206092 - 11206043
Alignment:
Q  200 tattcttgcggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    |||| ||||||||||||||||||||||||||||||||| |||||| ||||    
T  11206092 tatttttgcggtttggttcggttgctgagatgcaaaccgcaaaccgaacc 11206043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 36508932 - 36509024
Alignment:
Q  14 agcataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaac 107  Q
    |||||| || ||||||||||||||| | || ||| ||||||||||||||||  |||||| ||||||| ||||||||||| || |||||| ||||    
T  36508932 agcataagcctgaaacaaattattggggagaaaaggaaacaaattcatcac-cgaaaattaattgaaggagatggaaagcaaatagaatcgaac 36509024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 8768371 - 8768331
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  8768371 ggtttggttcggttgctgagatgcaaaccacaaaccgaacc 8768331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 18673033 - 18672962
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatgg 88  Q
    |||| |||||||||||||||||  |||| ||| ||||||||||||||| ||| |||||||||||| |||||||    
T  18673033 cataagcatgaaacaaattatttggaagaaaaggaaacaaattcatcaatgg-aaatgaattgaaggagatgg 18672962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 3211847 - 3211807
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  3211847 ggtttggttcggttgctgagatgcaaaccgcaaaccgaacc 3211807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 10672197 - 10672237
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  10672197 ggtttggttcggttgctgagatgcaaaccgcaaaccgaacc 10672237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 43429610 - 43429650
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  43429610 ggtttggttcggttgctgagatgcaaaccgcaaaccgaacc 43429650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 47070046 - 47070086
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  47070046 ggtttggttcggttgctgagatgcaaaccgcaaaccgaacc 47070086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 47204162 - 47204122
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  47204162 ggtttggttcggttgctgagatgcaaaccgcaaaccgaacc 47204122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 27054586 - 27054549
Alignment:
Q  21 gcatgaaacaaattattgagaagtaaatgaaacaaatt 58  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  27054586 gcatgaaacaaattattgggaagtaaaggaaacaaatt 27054549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 244
Target Start/End: Original strand, 47903663 - 47903696
Alignment:
Q  211 tttggttcggttgctgagatgcaaaccacaaacc 244  Q
    ||||||||||||||||||||||||||| ||||||    
T  47903663 tttggttcggttgctgagatgcaaaccgcaaacc 47903696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 5933055 - 5933095
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    |||||||||||||||||||||| |||||| |||||| ||||    
T  5933055 ggtttggttcggttgctgagatacaaaccgcaaaccgaacc 5933095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 151; Significance: 6e-80; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 50562420 - 50562206
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| |||||||||||||||||  ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  50562420 cataagcatgaaacaaattatttggaagtaaatgaaacaaattcatcactg-aaaataaattgaaagagatggaaaggaattagaatcgaacctgatggt 50562322  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttgg 215  Q
    |||||||||||||||||||||| |||| ||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  50562321 gcaacaatggaaaaatcgaatcgaaagagattattcttgagcta----tgtaattgggctagtacatgtttaagtaatattcattattcttggggtttgg 50562226  T
Q  216 ttcggttgctgagatgcaaa 235  Q
    ||  |||| |||||||||||    
T  50562225 ttttgttgttgagatgcaaa 50562206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 21 - 222
Target Start/End: Complemental strand, 6004227 - 6004031
Alignment:
Q  21 gcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggtgcaac 120  Q
    |||||||||||||||||| |||| ||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6004227 gcatgaaacaaattattgggaagaaaaggaaacaaattcatcactggaaa-tgaattaaaagagatggaaaggaattagaattgaacctgatggtgcaac 6004129  T
Q  121 aatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttggttcgg 220  Q
    |||||||||||||||||||||| ||||||||||| ||    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||    
T  6004128 aatggaaaaatcgaatcaaaagagattattcttgggc----tatgtaattgggctagtacatgtttaagtaacattcattattcttgcggtttggtttgg 6004033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 35531991 - 35531776
Alignment:
Q  21 gcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggtgcaac 120  Q
    |||||||||||||||||| |||||||| |||||| |||||| |  ||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  35531991 gcatgaaacaaattattgggaagtaaaggaaacacattcataaacggaaa-tgaattgaaagagatggaaaggaattagaatcgaacatgatggtgcaac 35531893  T
Q  121 aatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgc-----ggtttgg 215  Q
    |||||||||||||||| ||||  ||||||||||||||    |||| ||||||||||||||||||||||||||||||||||||||||||     |||||||    
T  35531892 aatggaaaaatcgaataaaaaacgattattcttgagc----tatgcaattgggctagtacatgtttaagtaatattcattattcttgcggtttggtttgg 35531797  T
Q  216 ttcggttgctgagatgcaaac 236  Q
    |||||||||||||||||||||    
T  35531796 ttcggttgctgagatgcaaac 35531776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 21586685 - 21586448
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| ||||||||||||||| |||||| |||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||| |||||    
T  21586685 cataagcatgaaacaaattactgagaaataaaggaaacaaattcatcaccggaaa-tgaattgaaagagatggaaaggaattagaatcgaacctcatggt 21586587  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgc------- 208  Q
    |||||||||||||||||||||| ||||  ||||||||||| |    ||||||||| |||||||||||||||||||||||||||||||||||||           
T  21586586 gcaacaatggaaaaatcgaatcgaaagatattattcttgaac----tatgtaatttggctagtacatgtttaagtaatattcattattcttgcgatttgg 21586491  T
Q  209 --ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
      ||||||||||||||||||||||||||||  |||||| ||||    
T  21586490 ttggtttggttcggttgctgagatgcaaactgcaaaccgaacc 21586448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 23 - 255
Target Start/End: Original strand, 32880547 - 32880789
Alignment:
Q  23 atgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaa---------atgaattgaaagagatggaaaggaattagaattgaacctgatg 113  Q
    |||||| ||||||||| |||||||| ||||||||||||||||||||||         ||||||||||||||||||||||||||||||||  |||||||||    
T  32880547 atgaaagaaattattgggaagtaaaggaaacaaattcatcactggaaatgaatggaaatgaattgaaagagatggaaaggaattagaatcaaacctgatg 32880646  T
Q  114 gtgcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgc----- 208  Q
    ||||||||||||||||||| |||| |||| |||||  |||||||    ||||||||||| ||||||||||||||||||||||||||| |||||||         
T  32880647 gtgcaacaatggaaaaatcaaatcgaaagagattaaacttgagc----tatgtaattggactagtacatgtttaagtaatattcatttttcttgcggttt 32880742  T
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaaccaaactg 255  Q
    |||||||||||||||||||||||||||||  |||||||||| |||||    
T  32880743 ggtttggttcggttgctgagatgcaaaccgtaaaccaaaccgaactg 32880789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 33002761 - 33002957
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| ||||||||||||||||||   |||||| ||||||||| | |||| ||||| | ||||||||||||||||||||| ||||||| ||||||||||||    
T  33002761 cataagcatgaaacaaattattggagagtaaaggaaacaaatacttcacaggaaa-taaattgaaagagatggaaaggagttagaatcgaacctgatggt 33002859  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttgg 215  Q
    ||||||||||||||||||||||||||| ||||||| ||||||    ||||||||||| || |||||| |||||| |||||||||||||||||||||||||    
T  33002860 gcaacaatggaaaaatcgaatcaaaagagattattattgagc----tatgtaattggactggtacatatttaagaaatattcattattcttgcggtttgg 33002955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 39098187 - 39098398
Alignment:
Q  21 gcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggtgcaac 120  Q
    |||| ||||||||||||| |||||||| ||||||| ||  ||||| |||| ||||||||||||||||||||| |||||||||  | ||||||||||||||    
T  39098187 gcatcaaacaaattattgggaagtaaaggaaacaagtttgtcactcgaaa-tgaattgaaagagatggaaagaaattagaatcaatcctgatggtgcaac 39098285  T
Q  121 aatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttggttcgg 220  Q
    |||| ||||||||| ||||||  ||||||||||||||    ||| |||||| | ||||||||||||||||||||||||||||||||||     |||||||    
T  39098286 aatgaaaaaatcgattcaaaaaagattattcttgagc----tatttaattgtgttagtacatgtttaagtaatattcattattcttgc-----ggttcgg 39098376  T
Q  221 ttgctgagatgcaaaccacaaa 242  Q
    ||||||||||||||||||||||    
T  39098377 ttgctgagatgcaaaccacaaa 39098398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 43030671 - 43030816
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| |||||||||||||||||| ||| |||| |||| ||||||||||||||| | ||||||||||||||||||||||||||||||| |||| |||||||    
T  43030671 cataagcatgaaacaaattattgggaaataaaggaaa-aaattcatcactggaga-tgaattgaaagagatggaaaggaattagaatcgaacttgatggt 43030768  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgta 163  Q
    |||||||||||||||||||||| |||  ||||||||||||||||||||    
T  43030769 gcaacaatggaaaaatcgaatcgaaaaagattattcttgagctatgta 43030816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 27642007 - 27641870
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| |||||||||||||||||| |||| ||| |||| ||||||||||||| |||||||||||||||||||||| |||||||||| | ||||||||||||    
T  27642007 cataagcatgaaacaaattattgggaagaaaaggaaataaattcatcactg-aaaatgaattgaaagagatggagaggaattagattcgaacctgatggt 27641909  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttg 154  Q
    || |||||||||||||||||||||||| |||||||||||    
T  27641908 gctacaatggaaaaatcgaatcaaaagagattattcttg 27641870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 48032836 - 48032779
Alignment:
Q  165 gtaattgggctagtacatgtttaagtaatattcattattcttgcggtttggttcggtt 222  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  48032836 gtaattgggctagtacatgtttaagtaatattcatgattcttgcggtttggtttggtt 48032779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 10369629 - 10369669
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  10369629 ggtttggttcggttgctgagatgcaaaccgcaaaccgaacc 10369669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 34794942 - 34794982
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  34794942 ggtttggttcggttgctgagatgcaaaccgcaaaccgaacc 34794982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 43030854 - 43030894
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  43030854 ggtttggttcggttgctgagatgcaaaccgcaaaccgaacc 43030894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 253
Target Start/End: Complemental strand, 27641879 - 27641819
Alignment:
Q  198 attattcttgcggtttggttcggtt-----gctgagatgcaaaccacaaaccaaaccaaac 253  Q
    |||||||||||||||||||| ||||     ||||||||||||||| ||||||||| |||||    
T  27641879 attattcttgcggtttggtttggtttagtggctgagatgcaaaccgcaaaccaaatcaaac 27641819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 35401875 - 35401835
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||| ||||||||||||||||| |||||| ||||    
T  35401875 ggtttggttcgattgctgagatgcaaaccgcaaaccgaacc 35401835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 44651429 - 44651477
Alignment:
Q  205 ttgcggtttggttcggttgctgagatgcaaaccacaaaccaaaccaaac 253  Q
    ||||||||||||||||||| | | ||| |||||||||| ||||||||||    
T  44651429 ttgcggtttggttcggttggtaaaatgaaaaccacaaatcaaaccaaac 44651477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 51252259 - 51252025
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| |||||||||||||||||| |||| |||||||||||||| || |||||||| ||||||||||||||||||||||||||||||| |||  |||||||    
T  51252259 cataagcatgaaacaaattattgggaagaaaatgaaacaaatttataactggaaa-tgaattgaaagagatggaaaggaattagaatcgaatttgatggt 51252161  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttgg 215  Q
    ||||||||||||||||||||||||||| ||||||| ||  ||    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  51252160 gcaacaatggaaaaatcgaatcaaaagagattattatttggc----tatgtaattaggctagtacatgtttaagtaatattcattattcttgcgggttgg 51252065  T
Q  216 ttcggttgctgagatgcaaaccacaaaccaaaccaaactg 255  Q
    || ||||||||||||||||||| ||||||||||| |||||    
T  51252064 tttggttgctgagatgcaaaccgcaaaccaaaccgaactg 51252025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 39256474 - 39256232
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| |||||||||||||||||| ||| |||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  39256474 cataagcatgaaacaaattattgggaaataaaggaaacaaattcatcattggaaa-tgaattgaaagagatggaaaggaattagaatcgaacctgatggt 39256376  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgc------- 208  Q
    |||||||||||||||||||||| |||  |||||||| |||||||    ||||||| |||||||||||||||||||||||||||||||||||||           
T  39256375 gcaacaatggaaaaatcgaatcgaaaaagattattcgtgagcta----tgtaatttggctagtacatgtttaagtaatattcattattcttgcggtttgg 39256280  T
Q  209 ---ggtttggttcggttgctgagatgcaaaccacaaaccaaaccaaac 253  Q
       ||||||||||||||||||||||||||||| |||||| ||||||||    
T  39256279 tttggtttggttcggttgctgagatgcaaaccgcaaaccgaaccaaac 39256232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 24910892 - 24910691
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| |||||||||||||||||| |||||||| ||||||||||||||||| |||| |||||||| |||||||||||| ||||||||| ||||||||||||    
T  24910892 cataagcatgaaacaaattattgggaagtaaaggaaacaaattcatcactcgaaa-tgaattgagagagatggaaagaaattagaatcgaacctgatggt 24910794  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttgg 215  Q
    |||||||| ||||||||||||| |||| ||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24910793 gcaacaattgaaaaatcgaatcgaaagagattattcttgagcta----tgtaattgggctagtacatgtttaagtaatattcattattcttccggtttgg 24910698  T
Q  216 ttcggtt 222  Q
    || ||||    
T  24910697 tttggtt 24910691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 32954323 - 32954544
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| |||||||||||||||||  |||||||| |||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  32954323 cataagcatgaaacaaattattatgaagtaaaggaaacaaattcatcactg-aaaatgaattgaaagagttggaaagtaattagaattgaacctgatggt 32954421  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattct-----tgcgg 210  Q
    |||||||||||||||||||||| ||||  |||||||||||||    |||||||||||||| |||||||||||||||||||||||||||||     |  ||    
T  32954422 gcaacaatggaaaaatcgaatcgaaagaaattattcttgagc----tatgtaattgggcttgtacatgtttaagtaatattcattattcttatggtttgg 32954517  T
Q  211 tttggttcggttgctgagatgcaaacc 237  Q
    |||||||||||||||||||||||||||    
T  32954518 tttggttcggttgctgagatgcaaacc 32954544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 33910615 - 33910414
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| |||||||||||||||||| |||||||| ||||||||||||||||| |||| |||||||||||||||||||| |||||||||| ||||||||||||    
T  33910615 cataagcatgaaacaaattattgggaagtaaaggaaacaaattcatcacttgaaa-tgaattgaaagagatggaaaagaattagaatcgaacctgatggt 33910517  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttgg 215  Q
    |||||| |||||||||||||||||||| |||||||||| ||     ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33910516 gcaacattggaaaaatcgaatcaaaagagattattcttaag----ttatgtaattgggctagtacatatttaagtaatattcattattcttgcggtttgg 33910421  T
Q  216 ttcggtt 222  Q
    || ||||    
T  33910420 tttggtt 33910414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 21 - 253
Target Start/End: Original strand, 44918790 - 44919012
Alignment:
Q  21 gcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggtgcaac 120  Q
    |||||||||||||||||| |||||||| |||||||||| ||||||||||| ||||| |||||||||||||| |||||||||| |||| |||||| |||||    
T  44918790 gcatgaaacaaattattgggaagtaaaggaaacaaattaatcactggaaa-tgaatcgaaagagatggaaaagaattagaatcgaacttgatggagcaac 44918888  T
Q  121 aatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttggttcgg 220  Q
    |||||||||||| ||||||||  ||||||||||||||    ||||||||||| |||||||||||||||||||||||||||||||||||||| |     ||    
T  44918889 aatggaaaaatcaaatcaaaaaagattattcttgagc----tatgtaattggactagtacatgtttaagtaatattcattattcttgcggtct-----gg 44918979  T
Q  221 ttgctgagatgcaaaccacaaaccaaaccaaac 253  Q
    |||| |||||||||||| |||||||||||||||    
T  44918980 ttgcagagatgcaaaccgcaaaccaaaccaaac 44919012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 33474685 - 33474886
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| |||||||||||||||||| || ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||      
T  33474685 cataagcatgaaacaaattattgggatgtaaaggaaacaaattcatcactggaaa-tgaattgaaagagatggaaaggaattagaatcgaacctgatgac 33474783  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttgg 215  Q
    ||||||||| ||||||| ||||||||| ||||||||||||||    ||||||||||||||||||||| |||||||||||||| |||||||||| ||||||    
T  33474784 gcaacaatgaaaaaatcaaatcaaaagagattattcttgagc----tatgtaattgggctagtacatatttaagtaatattcgttattcttgcagtttgg 33474879  T
Q  216 ttcggtt 222  Q
    || ||||    
T  33474880 tttggtt 33474886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 16529330 - 16529129
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| |||||||||||||||||  |||| ||| |||||||||| ||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  16529330 cataagcatgaaacaaattatttggaagaaaaggaaacaaattgatccctggaaa-tgaattgaaagagatggaaaggaattagaatcgaacctgatggt 16529232  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttgg 215  Q
    ||||||||| |||| |||||||||||| ||||||||||| ||    ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  16529231 gcaacaatgaaaaattcgaatcaaaagagattattcttgggc----tatgtaattgggctattacatgtttaagtaatattcactattcttgcggtttgg 16529136  T
Q  216 ttcggtt 222  Q
    || ||||    
T  16529135 tttggtt 16529129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 45692040 - 45692273
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| ||||||| |||||||||  |||||||| || | ||||||||| ||| ||| ||||||||||||||||||||||||||||||| |||||| |||||    
T  45692040 cataagcatgaagcaaattattaggaagtaaaggatataaattcatctctgtaaa-tgaattgaaagagatggaaaggaattagaatcgaacctaatggt 45692138  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcgg----- 210  Q
    ||||||||| |||||| |||||||||| |||||||||||||     ||||||||||| ||||||||| ||||||||||||| |||||||||||||         
T  45692139 gcaacaatgaaaaaattgaatcaaaagagattattcttgag----ttatgtaattggactagtacatatttaagtaatatttattattcttgcggtttgt 45692234  T
Q  211 tttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||||||||||||||||||| |||||| ||||    
T  45692235 tttggttcggttgctgagatgcaaaccgcaaaccgaacc 45692273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 1160856 - 1160710
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| |||||||||||||||||| ||| |||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||| | |||||||| |    
T  1160856 cataagcatgaaacaaattattgggaaataaaggaaacaaaatcatcactggaaa-tgaattgaaagagatggaaaggaattagaatcgtacctgatgtt 1160758  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgta 163  Q
    |||||||||||||||| ||||| |||  ||||||||||||||||||||    
T  1160757 gcaacaatggaaaaattgaatcgaaaaagattattcttgagctatgta 1160710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 21 - 156
Target Start/End: Original strand, 29389281 - 29389415
Alignment:
Q  21 gcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggtgcaac 120  Q
    |||||||||||||||||| |||||||| ||||||| |||||| ||||||| ||| |||||||||||||| |||||||||||| |||||||||||||||||    
T  29389281 gcatgaaacaaattattgggaagtaaaagaaacaagttcatccctggaaa-tgagttgaaagagatggagaggaattagaatcgaacctgatggtgcaac 29389379  T
Q  121 aatggaaaaatcgaatcaaaagtgattattcttgag 156  Q
    |||||||||||||||| ||||| |||||||||||||    
T  29389380 aatggaaaaatcgaattaaaagagattattcttgag 29389415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 104 - 255
Target Start/End: Original strand, 11899370 - 11899527
Alignment:
Q  104 gaacctgatggtgcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattatt 203  Q
    |||| |||||||||||||||||||||||| ||||||||  ||||||||||||||||||||    |||| |||||||||| ||||||||||||||||||||    
T  11899370 gaacatgatggtgcaacaatggaaaaatcaaatcaaaaaagattattcttgagctatgta----attgagctagtacatatttaagtaatattcattatt 11899465  T
Q  204 cttgcggtttgg----------ttcggttgctgagatgcaaaccacaaaccaaaccaaactg 255  Q
    ||||||||||||          |||||||||||||||||||||| |||| ||||||||||||    
T  11899466 cttgcggtttggtttggtttgattcggttgctgagatgcaaaccgcaaatcaaaccaaactg 11899527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 144 - 242
Target Start/End: Complemental strand, 6722528 - 6722430
Alignment:
Q  144 gattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgc-----ggtttggttcggttgctgagatgcaaacca 238  Q
    ||||||||||||||||||||    ||||||  |||||||||||||||||||||||||| ||||||     |||||||||||||||||||||||||||||     
T  6722528 gattattcttgagctatgta----attgggtcagtacatgtttaagtaatattcatta-tcttgcggtttggtttggttcggttgctgagatgcaaaccg 6722434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 243
Target Start/End: Complemental strand, 24910694 - 24910660
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaac 243  Q
    |||||||||||||||||||||||||||||||||||    
T  24910694 ggtttggttcggttgctgagatgcaaaccacaaac 24910660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 29390096 - 29390161
Alignment:
Q  184 tttaagtaatattcattattcttgcggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||||| ||||||| ||||||||| || | ||| ||||||||||||| |||||| ||||    
T  29390096 tttaagtaatatttattattcgtgcggtttgatttgattgttgagatgcaaaccgcaaaccgaacc 29390161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 5155038 - 5154998
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  5155038 ggtttggttcggttgctgagatgcaaaccgcaaaccgaacc 5154998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 8211658 - 8211698
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  8211658 ggtttggttcggttgctgagatgcaaaccgcaaaccgaacc 8211698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 29707782 - 29707742
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  29707782 ggtttggttcggttgctgagatgcaaaccgcaaaccgaacc 29707742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 144; Significance: 9e-76; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 12680914 - 12680672
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| ||||||||||||||||||| ||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  12680914 cataagcatgaaacaaattattgaaaagtaaaggaaacaaattcatcacttgaaa-tgaattgaaagagatggaaaggaattagaatcgaacctgatggt 12680816  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgc------- 208  Q
    ||||||||||||||||||||||||||| ||||||| || ||     |||||||||||||||||||||||||||||||||||||| ||||||||           
T  12680815 gcaacaatggaaaaatcgaatcaaaagagattatttttaag----ttatgtaattgggctagtacatgtttaagtaatattcatcattcttgcggtttgg 12680720  T
Q  209 ---ggtttggttcggttgctgagatgcaaaccacaaaccaaaccaaac 253  Q
       ||||||||||||||||||||||||||||| |||||||||||||||    
T  12680719 tttggtttggttcggttgctgagatgcaaaccgcaaaccaaaccaaac 12680672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 22 - 222
Target Start/End: Complemental strand, 2226716 - 2226521
Alignment:
Q  22 catgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggtgcaaca 121  Q
    ||||||||||||||||| |||||||| |||||| ||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2226716 catgaaacaaattattgggaagtaaaggaaacatattcatcacaggaaa-tgaattgaaagagatggaaaggaattagaatcgaacctgatggtgcaaca 2226618  T
Q  122 atggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttggttcggt 221  Q
    ||||||||||||||||||||| |||||||| |||||||    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||    
T  2226617 atggaaaaatcgaatcaaaagagattattcatgagcta----tgtaattgggctaatacatgtttaagtaatattcattattctggcggtttggtttggt 2226522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 36103450 - 36103249
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| |||| |||||||||||||  |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||| |||||||    
T  36103450 cataagcatcaaacaaattattggaaagtaaatgaaacaaattcatcactgtaaa-tgaattgaaagagatggaaaggaattagaatcgaacttgatggt 36103352  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttgg 215  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||     ||||||||||||||||| |||||||||||||||||||||||||||||    
T  36103351 gcaacaatggaaaaatcgaatcaaaaacgattattcttgagctatgtag----ttgggctagtacatgttcaagtaatattcattattcttgcggtttgg 36103256  T
Q  216 ttcggtt 222  Q
    || ||||    
T  36103255 tttggtt 36103249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 333122 - 332876
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| |||||||||||||||||| |||||||| |||| ||||||||||| ||||| ||||||||||||||| ||||||||||||||| |||| |||||||    
T  333122 cataagcatgaaacaaattattgggaagtaaaagaaataaattcatcacgggaaa-tgaattgaaagagatagaaaggaattagaatcgaacttgatggt 333024  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgc------- 208  Q
    ||||  ||||||||||||||||||||  ||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||           
T  333023 gcaattatggaaaaatcgaatcaaaatagattattcttgagcta--tatgtaattgggccagtacatgtttaagtaatattcattattcttgcggtttag 332926  T
Q  209 ---ggtttggttcggttgctgagatgcaaaccacaaaccaaaccaaactg 255  Q
       |||||||||||| |||||||||||||||| ||||||||||| |||||    
T  332925 tttggtttggttcggatgctgagatgcaaaccgcaaaccaaaccgaactg 332876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 25 - 217
Target Start/End: Complemental strand, 12165773 - 12165586
Alignment:
Q  25 gaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggtgcaacaatg 124  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||| | ||| |||||||||| |||||||||| |||||||||||||||||||||||||    
T  12165773 gaaacaaattattgacaagtaaaggaaacaaattcatcactggaaa-taaatcgaaagagatgaaaaggaattaaaattgaacctgatggtgcaacaatg 12165675  T
Q  125 gaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttggtt 217  Q
    |||| |||||||| |||| ||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12165674 gaaagatcgaatcgaaagagattattcttgagcta----tgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttggtt 12165586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 32521059 - 32520826
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| |||||||||||||||||| |||||||| ||||||||||||||||| |||| |||||||||||||||||||| ||| |||||| ||||||||||||    
T  32521059 cataagcatgaaacaaattattgggaagtaaaagaaacaaattcatcacttgaaa-tgaattgaaagagatggaaatgaactagaatcgaacctgatggt 32520961  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgc-----gg 210  Q
    ||||||||| ||||||||||||||||| |||||||||| |   || ||||||||||||||||||||| |||||||||||||||| ||||||||     ||    
T  32520960 gcaacaatgaaaaaatcgaatcaaaagagattattcttaa---at-tatgtaattgggctagtacatctttaagtaatattcatcattcttgcggtttgg 32520865  T
Q  211 tttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||||||||||||||| | | |||||||||||    
T  32520864 tttggttcggttgctgagatgcagatcgcaaaccaaacc 32520826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 9161226 - 9161425
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| |||||||||||||||||| |||||||| |||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||    
T  9161226 cataagcatgaaacaaattattgggaagtaaaggaaataaattcatcactggaaa-tgaattcaaagagatggaaaggaattagaattgaacttgatggt 9161324  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttgg 215  Q
    ||||||||||||||||||||||||||| |||||||  ||||||||||      |||||||||| ||| ||||||||||||||||||||||||||||| ||    
T  9161325 gcaacaatggaaaaatcgaatcaaaagagattatttctgagctatgt------ttgggctagtgcatatttaagtaatattcattattcttgcggttggg 9161418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 21 - 217
Target Start/End: Complemental strand, 30265626 - 30265436
Alignment:
Q  21 gcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggtgcaac 120  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||  ||||||||| |||| ||||||||||||    
T  30265626 gcatgaaacaaattattgggaagtaaaggaaacaaattcatcactggaaa-tgaattgaaagagatggaaaataattagaatcgaacttgatggtgcaac 30265528  T
Q  121 aatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttggtt 217  Q
    ||||||||||||||||  |||| | ||||| ||||||    |||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||    
T  30265527 aatggaaaaatcgaattgaaagcg-ttatttttgagc----tatgtaattgggctagcacatgattaagtaatattcattattcttgcgatttggtt 30265436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 25 - 196
Target Start/End: Original strand, 35893238 - 35893405
Alignment:
Q  25 gaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaa-ggaattagaattgaacctgatggtgcaacaat 123  Q
    |||||||||||||| |||||||| |||||||||||||||||||||| |||||||||| ||||||||| ||||||||||| || | |||||||||||||||    
T  35893238 gaaacaaattattgggaagtaaaggaaacaaattcatcactggaaa-tgaattgaaaaagatggaaaaggaattagaatcgagcgtgatggtgcaacaat 35893336  T
Q  124 ggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatatt 196  Q
    | ||||||| |||| |||| ||||||||||||||    |||||||||||||||||||||||||||||||||||    
T  35893337 gaaaaaatcaaatcgaaagagattattcttgagc----tatgtaattgggctagtacatgtttaagtaatatt 35893405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 24 - 222
Target Start/End: Original strand, 38433937 - 38434130
Alignment:
Q  24 tgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggtgcaacaat 123  Q
    ||||||||||||||| |||| |||  ||| |||||||||| |||||| |||||| || |||||| ||| |||||||||| |||| |||||||||||||||    
T  38433937 tgaaacaaattattgggaagaaaagaaaataaattcatcattggaaa-tgaattaaaggagatgaaaaagaattagaatcgaacgtgatggtgcaacaat 38434035  T
Q  124 ggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttggttcggtt 222  Q
    ||||||||||||| ||||| ||||||||||  ||    |||||||||||||||||||| ||||||||||||||  ||||||||||||||||||| ||||    
T  38434036 ggaaaaatcgaattaaaagagattattcttaggc----tatgtaattgggctagtacaagtttaagtaatatttcttattcttgcggtttggtttggtt 38434130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 24 - 236
Target Start/End: Complemental strand, 17084706 - 17084499
Alignment:
Q  24 tgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggtgcaacaat 123  Q
    ||||| ||||||||| | || ||| |||||||||||||||||| ||| ||| ||||| |||||| |||  || |||| | |||| ||||||||||| |||    
T  17084706 tgaaataaattattggggagaaaaggaaacaaattcatcactgaaaattga-ttgaaggagatgaaaaacaaatagattcgaacttgatggtgcaataat 17084608  T
Q  124 ggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttggttcggttg 223  Q
    ||||||||||||||||||  ||||||| |||    || |||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  17084607 ggaaaaatcgaatcaaaatagattatttttgg---at-tatgtaattgggttagtacaagtttaagtaatattgattattcttgcggtttggttcggttg 17084512  T
Q  224 ctgagatgcaaac 236  Q
    |||||||||||||    
T  17084511 ctgagatgcaaac 17084499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 23780977 - 23781114
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| |||||||||||||||||| |||||||| ||||||||||||      | |||||||||||||||||||||||||||||||||| ||||| ||||||    
T  23780977 cataagcatgaaacaaattattgggaagtaaaggaaacaaattca------ggaaatgaattgaaagagatggaaaggaattagaatcgaacccgatggt 23781070  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagcta 159  Q
     |||||||||||||||| ||||||||| ||||||||||||||||    
T  23781071 acaacaatggaaaaatcaaatcaaaagagattattcttgagcta 23781114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 23867930 - 23868067
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| |||||||||||||||||| |||||||| ||||||||||||      | |||||||||||||||||||||||||||||||||| ||||| ||||||    
T  23867930 cataagcatgaaacaaattattgggaagtaaaggaaacaaattca------ggaaatgaattgaaagagatggaaaggaattagaatcgaacccgatggt 23868023  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagcta 159  Q
     |||||||||||||||| ||||||||| ||||||||||||||||    
T  23868024 acaacaatggaaaaatcaaatcaaaagagattattcttgagcta 23868067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 21 - 208
Target Start/End: Original strand, 42544902 - 42545086
Alignment:
Q  21 gcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaat--tgaaagagatggaaaggaattagaattgaacctgatggtgca 118  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||| |||||  ||||||||||||||| |||||| |||  | ||| ||||||||    
T  42544902 gcatgaaataaattattgagaagtaaaggaaacaaattcatcactggaaa-tgaatattgaaagagatggaaaagaattaaaatcaagccttatggtgca 42545000  T
Q  119 acaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgc 208  Q
    |||||| | || | ||||||||   |||||||||||||||||||     ||||||||| ||||| |||||||||||||||||||||||||    
T  42545001 acaatgaacaagttgaatcaaattagattattcttgagctatgtt----attgggctattacatatttaagtaatattcattattcttgc 42545086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 38334803 - 38334684
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| ||||||| |||||||||| |||| ||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||| |||||||||| |    
T  38334803 cataagcatgaatcaaattattgggaagaaaatgaaacaaattcatcattggaaa-tgaattgaaggagatggaaaggaattagaatcgaacctgatgat 38334705  T
Q  116 gcaacaatggaaaaatcgaat 136  Q
    |||||||||| ||||||||||    
T  38334704 gcaacaatgggaaaatcgaat 38334684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 217
Target Start/End: Complemental strand, 36176934 - 36176763
Alignment:
Q  21 gcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggtgcaac 120  Q
    ||||||||| ||||||||  ||||||| ||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  36176934 gcatgaaactaattattggaaagtaaaggaaacaaattcatcattggaaa-tgaatcgaaagagatggaaaggaattagaattgaacctgatggtgcaac 36176836  T
Q  121 aatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttggtt 217  Q
                        ||||||| |||||||||    |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  36176835 --------------------agtgatttttcttgagc----tatgtaattgggctagtacacgtttaagtaatagtcattattcttgcggtttggtt 36176763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 76 - 242
Target Start/End: Original strand, 10174365 - 10174530
Alignment:
Q  76 ttgaaagagatggaaaggaattagaattgaacctgatggtgcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggct 175  Q
    |||||||||||| ||| |||||| ||| ||||||||||||||||||||| ||||||||||||||||| |   |||||||||     |||||||||||| |    
T  10174365 ttgaaagagatgaaaatgaattataatcgaacctgatggtgcaacaatgaaaaaatcgaatcaaaagag---attcttgag----ttatgtaattgggat 10174457  T
Q  176 agtacatgtttaagtaatattcattattc---ttg---cggtttggttcggttgctgagatgcaaaccacaaa 242  Q
    ||||||||||||||||||||||||| | |   |||    ||||||||||||||||||||||||||||| ||||    
T  10174458 agtacatgtttaagtaatattcattttgcggtttggtttggtttggttcggttgctgagatgcaaaccgcaaa 10174530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 9988722 - 9988586
Alignment:
Q  22 catgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggtgcaaca 121  Q
    ||||||||||||||||   ||| ||| ||||||||||||||||| |||| ||||||||| |||||| |||||||||| ||| ||| |||||||||||| |    
T  9988722 catgaaacaaattatttgaaagaaaaggaaacaaattcatcactagaaa-tgaattgaaggagatgaaaaggaattaaaatcgaatctgatggtgcaaga 9988624  T
Q  122 atggaaaaatcgaatcaaaagtgattattcttgagcta 159  Q
    ||| |||||| |||||||||| |||| |||||| ||||    
T  9988623 atgaaaaaattgaatcaaaagagattgttcttgggcta 9988586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 129 - 217
Target Start/End: Complemental strand, 36176616 - 36176532
Alignment:
Q  129 aatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttggtt 217  Q
    |||||||||||||| |||| |||||||||||||||    |||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  36176616 aatcgaatcaaaagagatttttcttgagctatgta----attgggctagtacacgtttaagtaatagtcattattcttgcggtttggtt 36176532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 36103252 - 36103214
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaa 247  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  36103252 ggtttggttcggttgctgagatgcaaactacaaaccaaa 36103214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 666973 - 666933
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  666973 ggtttggttcggttgctgagatgcaaaccgcaaaccgaacc 666933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 701585 - 701625
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  701585 ggtttggttcggttgctgagatgcaaaccgcaaaccgaacc 701625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 8409354 - 8409394
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  8409354 ggtttggttcggttgctgagatgcaaaccgcaaaccgaacc 8409394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 11917823 - 11917863
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  11917823 ggtttggttcggttgctgagatgcaaaccgcaaaccgaacc 11917863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 27885788 - 27885748
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  27885788 ggtttggttcggttgctgagatgcaaaccgcaaaccgaacc 27885748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 42545815 - 42545863
Alignment:
Q  201 attcttgcggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||| ||||||||||||||| ||||||||||||| |||||| ||||    
T  42545815 attcttgtggtttggttcggttgttgagatgcaaaccgcaaaccgaacc 42545863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 246
Target Start/End: Complemental strand, 36176528 - 36176493
Alignment:
Q  211 tttggttcggttgctgagatgcaaaccacaaaccaa 246  Q
    ||||||||||||||||||||||||||| ||||||||    
T  36176528 tttggttcggttgctgagatgcaaaccgcaaaccaa 36176493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 246
Target Start/End: Complemental strand, 36176759 - 36176724
Alignment:
Q  211 tttggttcggttgctgagatgcaaaccacaaaccaa 246  Q
    ||||||||||||||||||||||||||| ||||||||    
T  36176759 tttggttcggttgctgagatgcaaaccgcaaaccaa 36176724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 38334455 - 38334416
Alignment:
Q  210 gtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    |||||||||||||||||||||||||||| |||||| ||||    
T  38334455 gtttggttcggttgctgagatgcaaaccgcaaaccgaacc 38334416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 35893205 - 35893247
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaatt 58  Q
    |||| |||||||||||||||||| |||||||| ||||||||||    
T  35893205 cataagcatgaaacaaattattgggaagtaaaggaaacaaatt 35893247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 9161422 - 9161462
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    |||||||||||||||||||||| |||||| |||||| ||||    
T  9161422 ggtttggttcggttgctgagattcaaaccgcaaaccgaacc 9161462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 30002366 - 30002406
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||||||||||||||| ||||| |||||| ||||    
T  30002366 ggtttggttcggttgctgagatgtaaaccgcaaaccgaacc 30002406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 38434127 - 38434167
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  38434127 ggtttggttcggttgctgagatacaaaccgcaaatcaaacc 38434167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 13801816 - 13801615
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| |||||||| ||||||||| |||||||| ||||||||||||||| |||||| |||||||||||||||| |||||||||||||| ||||||||||||    
T  13801816 cataagcatgaaataaattattgggaagtaaaggaaacaaattcatcagtggaaa-tgaattgaaagagatgaaaaggaattagaatcgaacctgatggt 13801718  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttgg 215  Q
    |||||||||||||||| |||||||||| ||||||||||||||||    ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13801717 gcaacaatggaaaaattgaatcaaaagagattattcttgagcta----tgtaattgggctagtacatatttaagtaatattcattattcttgcggtttgg 13801622  T
Q  216 ttcggtt 222  Q
    || ||||    
T  13801621 tttggtt 13801615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 35039777 - 35039576
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| |||||||||||||||||| |||| ||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||  |||||||    
T  35039777 cataagcatgaaacaaattattgggaagaaaaggaaacaaattcatcactggaaa-tgaattaaaagagatggaaaggaattagaattgaatttgatggt 35039679  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttgg 215  Q
    ||||||||||||||||||||||||||| ||||||||||| ||    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  35039678 gcaacaatggaaaaatcgaatcaaaagagattattcttgggc----tatgtaattgggctagtacatgtttaagtaacattcattattcttgcggtttgg 35039583  T
Q  216 ttcggtt 222  Q
    || ||||    
T  35039582 tttggtt 35039576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 23 - 253
Target Start/End: Original strand, 33550574 - 33550809
Alignment:
Q  23 atgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggtgcaacaa 122  Q
    |||||||||||||||| |||| ||| ||||||||||||||||| |||| |||||| |||||||| ||||||||||||||| |||||||||||||||||||    
T  33550574 atgaaacaaattattgggaagaaaaggaaacaaattcatcactagaaa-tgaattaaaagagatcgaaaggaattagaatcgaacctgatggtgcaacaa 33550672  T
Q  123 tggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggttt--------- 213  Q
    |||||||||||||||||||| ||||||||||| ||    ||||||||||||||||||||||||||||||||||||||||||||||||||||             
T  33550673 tggaaaaatcgaatcaaaagagattattcttgggc----tatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttggtttggtt 33550768  T
Q  214 -ggttcggttgctgagatgcaaaccacaaaccaaaccaaac 253  Q
     |||||||||||||||||||||||| |||||| ||||||||    
T  33550769 cggttcggttgctgagatgcaaaccgcaaaccgaaccaaac 33550809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 15859972 - 15860172
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||| |||| |||||||||| | | ||||||||    
T  15859972 cataagcatgaaacaaattattgagaagtaaaggaaacaaattcatcacta-aaaatgaattgaaagagatagaaaagaattagaatcggaactgatggt 15860070  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttgg 215  Q
    |||||||||||||| || ||||||||| ||||||||||||||||||    ||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  15860071 gcaacaatggaaaa-tctaatcaaaagagattattcttgagctatg----taattgggctagtacatgtttaattaatattcattattcttgcagtttgg 15860165  T
Q  216 ttcggtt 222  Q
    || ||||    
T  15860166 tttggtt 15860172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 16 - 218
Target Start/End: Original strand, 25137388 - 25137585
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| ||||||||||||||||||  ||| ||| |||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||    
T  25137388 cataagcatgaaacaaattattggaaagaaaaggaaacaaattcatcactggaaa-tgaattgaaagagaaggaaatgaattagaattgaacctgatggt 25137486  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttgg 215  Q
    |||| | || ||||||||||||||||| ||||||||||| ||    |||||||||||| ||||||||||||||||||||||||||||| ||| |||||||    
T  25137487 gcaatattgaaaaaatcgaatcaaaagagattattcttgggc----tatgtaattgggatagtacatgtttaagtaatattcattattattgtggtttgg 25137582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 22 - 212
Target Start/End: Original strand, 10591099 - 10591273
Alignment:
Q  22 catgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggtgcaaca 121  Q
    ||||||||||||||||| |||||||| |||||||||| |||||||            ||||||||||||| |||||||||| |||||||||||| |||||    
T  10591099 catgaaacaaattattgggaagtaaaagaaacaaattaatcactg------------aaagagatggaaatgaattagaatcgaacctgatggtacaaca 10591186  T
Q  122 atggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtt 212  Q
    ||| |||||||||||| ||||  |||||||||||||    ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10591187 atgaaaaaatcgaatcgaaagacattattcttgagc----tatgtaattgggctattacatgtttaagtaatattcattattcttgcggtt 10591273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 10390858 - 10390729
Alignment:
Q  23 atgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggtgcaacaa 122  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||| |||||||||||||||    
T  10390858 atgaaacaaattattgagaaataaaggaaacaaattcatcactggaaa-tgaattgaaagagatggaaaggaattaaaatcgaatctgatggtgcaacaa 10390760  T
Q  123 tggaaaaatcgaatcaaaagtgattattctt 153  Q
    ||||||||| ||||| |||  ||||||||||    
T  10390759 tggaaaaattgaatcgaaaaagattattctt 10390729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 5866723 - 5866683
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  5866723 ggtttggttcggttgctgagatgcaaaccgcaaaccgaacc 5866683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 12270924 - 12270964
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  12270924 ggtttggttcggttgctgagatgcaaaccgcaaaccgaacc 12270964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 10390681 - 10390648
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaa 242  Q
    ||||||||||||||||||||||||||||| ||||    
T  10390681 ggtttggttcggttgctgagatgcaaaccgcaaa 10390648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 10494262 - 10494223
Alignment:
Q  50 aaacaaattcatcactggaaaatgaattgaaagagatggaa 90  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  10494262 aaacaaattcatcactg-aaaatgaattgaaggagatggaa 10494223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 15837305 - 15837261
Alignment:
Q  205 ttgcggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||||||||||||| | ||  |||||||||||||||||    
T  15837305 ttgcggtttggttcggttgctaaaataaaaaccacaaaccaaacc 15837261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 69374 - 69136
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| |||||||||||||||||| |||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||  |||||||    
T  69374 cataagcatgaaacaaattattgggaagaaaatgaaacaaatttatcactggaaa-tgaattgaaagagatggaaaggaattagaatcgaatttgatggt 69276  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgc------- 208  Q
    ||||||||||||||||||||||||||| ||||||| ||| ||    ||||||||| |||||||||||||||||||||||||||||||||||||           
T  69275 gcaacaatggaaaaatcgaatcaaaagagattattattgggc----tatgtaattaggctagtacatgtttaagtaatattcattattcttgcgggttgt 69180  T
Q  209 ---ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
       ||||||||||||||||||||||||||||| |||||||||||    
T  69179 tttggtttggttcggttgctgagatgcaaaccgcaaaccaaacc 69136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 109 - 249
Target Start/End: Complemental strand, 77388 - 77242
Alignment:
Q  109 tgatggtgcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgc 208  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  77388 tgatggtgcaacaatggaaaaatcgaatcaaaagtgattattattgggc----tatgtaattaggctagtacatgtttaagtaatattcattattcttgc 77293  T
Q  209 ----------ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
              ||||||||||||||||||||||||||||| |||||||||||    
T  77292 gggttgttttggtttggttcggttgctgagatgcaaaccgcaaaccaaacc 77242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 8e-70; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 18169865 - 18169632
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| |||||||||||||||||   ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||    
T  18169865 cataagcatgaaacaaattatttgcaagtaaaggaaacaaattcatcactggaaa-tgaattgaaagagatggaaaggaattagaatcaaacctgatggt 18169767  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgc-----gg 210  Q
    |||| ||||||||||||||||| | || |||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||     |     
T  18169766 gcaataatggaaaaatcgaatcgatagagattattcttgag----gtatgtaattgggctagtacatgtttaagtaatattcattattcttgcagtttga 18169671  T
Q  211 tttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    |||||||||| ||| |||||||||||| |||||||||||    
T  18169670 tttggttcggctgccgagatgcaaaccgcaaaccaaacc 18169632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 18633431 - 18633198
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| |||||||||||||||||   ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||    
T  18633431 cataagcatgaaacaaattatttgcaagtaaaggaaacaaattcatcactggaaa-tgaattgaaagagatggaaaggaattagaatcaaacctgatggt 18633333  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgc-----gg 210  Q
    |||| ||||||||||||||||| | || |||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||     |     
T  18633332 gcaataatggaaaaatcgaatcgatagagattattcttgag----gtatgtaattgggctagtacatgtttaagtaatattcattattcttgcagtttga 18633237  T
Q  211 tttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    |||||||||| ||| |||||||||||| |||||||||||    
T  18633236 tttggttcggctgccgagatgcaaaccgcaaaccaaacc 18633198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 36827631 - 36827430
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| |||||||||||||||||| |||||||| ||||||||||||||  |||||| | ||||||||||||||||||| ||||||||| ||||||||||||    
T  36827631 cataagcatgaaacaaattattgggaagtaaaagaaacaaattcatcggtggaaa-taaattgaaagagatggaaagaaattagaatcgaacctgatggt 36827533  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttgg 215  Q
    |||||||||||||||| ||||| |||| ||||| ||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36827532 gcaacaatggaaaaattgaatcgaaagagattaatcttgagcta----tgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttgg 36827437  T
Q  216 ttcggtt 222  Q
    || ||||    
T  36827436 tttggtt 36827430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 23 - 249
Target Start/End: Original strand, 14549478 - 14549705
Alignment:
Q  23 atgaaacaaattatt-gagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggtgcaaca 121  Q
    ||||||||| ||||| | |||||||| |||||||||||||||||| ||||| |||||||||||||||||||||| |||||| |||||||||||| |||||    
T  14549478 atgaaacaatttatttgggaagtaaaggaaacaaattcatcactg-aaaattaattgaaagagatggaaaggaaatagaatcgaacctgatggtacaaca 14549576  T
Q  122 atggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgc-----ggtttggt 216  Q
    |||||||| |||||||||||| ||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||| |     ||||||||    
T  14549577 atggaaaattcgaatcaaaagagattattcttgagc----tatgtaattgggctagtacatgtttaagtaatattcattattcttacggtttggtttggt 14549672  T
Q  217 tcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    |||| |||||||||||||||| |||||| ||||    
T  14549673 tcggatgctgagatgcaaaccgcaaaccgaacc 14549705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 22 - 253
Target Start/End: Original strand, 3682169 - 3682399
Alignment:
Q  22 catgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggtgcaaca 121  Q
    |||||||||| |||||| |||| ||||||||||||||| ||| |||||  |||||||||| |||||| ||| ||||||||||||||||||||||| || |    
T  3682169 catgaaacaagttattgggaagaaaatgaaacaaattcgtcagtggaa--tgaattgaaatagatggtaagaaattagaattgaacctgatggtggaaaa 3682266  T
Q  122 atggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgc-----ggtttggt 216  Q
    |||||||||| |||||||||| |||||||||| || |   |||||||||||||||||||||||||| ||||||||||||||||||||     ||||||||    
T  3682267 atggaaaaattgaatcaaaagagattattctt-aggt---tatgtaattgggctagtacatgtttaggtaatattcattattcttgcggtttggtttggt 3682362  T
Q  217 tcggttgctgagatgcaaaccacaaaccaaaccaaac 253  Q
    ||||||||||||||||||||| |||||||||||||||    
T  3682363 tcggttgctgagatgcaaaccgcaaaccaaaccaaac 3682399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 30392324 - 30392524
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| |||||||||||||||||| |||| ||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||  ||||| || ||    
T  30392324 cataagcatgaaacaaattattg-gaagaaaaggaaacaaattcatcactggaaa-tgaattaaaagagatggaaaggaattagaatcaaacctcatagt 30392421  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttgg 215  Q
    ||| ||||||||||||||||||||||| ||||||| ||| ||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30392422 gcagcaatggaaaaatcgaatcaaaagagattattgttgggc----tatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttgg 30392517  T
Q  216 ttcggtt 222  Q
    || ||||    
T  30392518 tttggtt 30392524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 10661392 - 10661593
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| |||||||||||||||||| |||||||| ||||||||||| |||||||||| ||||||||||||| |||||| |||||||||| |||| |||||||    
T  10661392 cataagcatgaaacaaattattgggaagtaaaggaaacaaattcttcactggaaa-tgaattgaaagagttggaaatgaattagaatcgaacatgatggt 10661490  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttgg 215  Q
     |||||||| ||||||||||||||||  ||| ||||||||||    |||||||| |||||||||||||||||||  ||||||||||| ||||||||||||    
T  10661491 acaacaatgaaaaaatcgaatcaaaaaagataattcttgagc----tatgtaatcgggctagtacatgtttaagatatattcattatccttgcggtttgg 10661586  T
Q  216 ttcggtt 222  Q
    || ||||    
T  10661587 tttggtt 10661593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 22 - 249
Target Start/End: Complemental strand, 36910165 - 36909949
Alignment:
Q  22 catgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggtgcaaca 121  Q
    ||||||||||||||||| |||||||| |||| ||||||||||| | |||||||||||||||||||||||| ||||||||||  |||||||||||||||||    
T  36910165 catgaaacaaattattgggaagtaaaggaaataaattcatcaccg-aaaatgaattgaaagagatggaaatgaattagaatcaaacctgatggtgcaaca 36910067  T
Q  122 atggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtt-----tggt 216  Q
    |||||||||| |||||||||  ||||||||||||||     ||||||||||||||||||||         |||||||||||||||||||||     ||||    
T  36910066 atggaaaaatggaatcaaaa-agattattcttgagc-----atgtaattgggctagtacat---------atattcattattcttgcggtttggtatggt 36909982  T
Q  217 tcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    |||||| |||||||||||||| |||||| ||||    
T  36909981 tcggttcctgagatgcaaaccgcaaaccgaacc 36909949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 24 - 217
Target Start/End: Original strand, 33068844 - 33069032
Alignment:
Q  24 tgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggtgcaacaat 123  Q
    ||||||||||||||| |||| ||| |||| ||||||||||||| ||||||||||||| || ||| |||||||||||||| |||  |||||||||||||||    
T  33068844 tgaaacaaattattgggaagaaaaggaaataaattcatcactg-aaaatgaattgaaggaaatgaaaaggaattagaatcgaatttgatggtgcaacaat 33068942  T
Q  124 ggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttggtt 217  Q
    ||||||||| ||||||||| |||||||||||||     |||||||||||||| |||||  ||||||||||||| |||||| ||| |||||||||    
T  33068943 ggaaaaatcaaatcaaaagagattattcttgag----ttatgtaattgggctggtacaaatttaagtaatattgattatttttgtggtttggtt 33069032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 121 - 249
Target Start/End: Original strand, 44673068 - 44673206
Alignment:
Q  121 aatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgc----------gg 210  Q
    |||| ||||||  |||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||    
T  44673068 aatgaaaaaattaaatcaaaagcaattattattgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcagtttggtttgg 44673167  T
Q  211 tttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  44673168 tttggttcggttgctgagatgcaaaccgcaaaccaaacc 44673206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 6200677 - 6200574
Alignment:
Q  115 tgcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttg 214  Q
    |||||||||||||||||||||||||||| ||||||||||| |     ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6200677 tgcaacaatggaaaaatcgaatcaaaagagattattcttggg----ttatgtaattgggctagtacatgtttcagtaatattcattattcttgcggtttg 6200582  T
Q  215 gttcggtt 222  Q
    ||| ||||    
T  6200581 gtttggtt 6200574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 3006273 - 3006233
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  3006273 ggtttggttcggttgctgagatgcaaaccgcaaaccgaacc 3006233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 5802597 - 5802557
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||| ||||||||||||||||||| |||||| ||||    
T  5802597 ggtttggtttggttgctgagatgcaaaccgcaaaccgaacc 5802557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 128885 - 129087
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaa-tgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatgg 114  Q
    |||| |||||||||||||||||| |||| ||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||  ||||||    
T  128885 cataagcatgaaacaaattattgggaagaaaaatgaaacaaatttatcactg-aaaatgaattgaaagagatggaaaggaattagaatcgaatttgatgg 128983  T
Q  115 tgcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttg 214  Q
    ||||||||||||||||||||||  |||| ||||||| ||| ||    ||||||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  128984 tgcaacaatggaaaaatcgaatataaagagattattattgggc----tatgtaattaggctagtacatgtttaagtaatattcattattcttgcgggttg 129079  T
Q  215 gttcggtt 222  Q
    ||| ||||    
T  129080 gtttggtt 129087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 106278 - 106517
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaa-tgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatgg 114  Q
    |||| |||||||||||||||||  |||| ||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||  ||||||    
T  106278 cataagcatgaaacaaattattcggaagaaaaatgaaacaaatttatcactggaaa-tgaattgaaagagatggaaaggaattagaatcgaatttgatgg 106376  T
Q  115 tgcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgc------ 208  Q
    |||||||||||||||||||||| |||||  |||||| ||  ||    ||||||||| |||||||||||||||||||||||||||||||||||||          
T  106377 tgcaacaatggaaaaatcgaataaaaagaaattattattaggc----tatgtaattaggctagtacatgtttaagtaatattcattattcttgcgggttg 106472  T
Q  209 ----ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
        ||||||||||||||| ||||||||||||| |||||||||||    
T  106473 gttgggtttggttcggttgttgagatgcaaaccgcaaaccaaacc 106517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 40413 - 40212
Alignment:
Q  16 cataggcatgaaacaaattattgagaagtaaatgaaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggt 115  Q
    |||| |||| ||||||||||| | ||||||||  ||| |||||||||||| |||| ||||||||||||||||||||  ||||||||| |||||||||| |    
T  40413 cataagcattaaacaaattatggggaagtaaagtaaataaattcatcacttgaaa-tgaattgaaagagatggaaataaattagaatggaacctgatgtt 40315  T
Q  116 gcaacaatggaaaaatcgaatcaaaagtgattattcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttgg 215  Q
    ||||||||||| |||| ||||||||||  |||||||||||||||    |||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  40314 gcaacaatggacaaattgaatcaaaagaaattattcttgagcta----tgtaattgggctagtagatgtttaagtaatattcattattcttgtggtttgg 40219  T
Q  216 ttcggtt 222  Q
    || ||||    
T  40218 tttggtt 40212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 47575 - 47408
Alignment:
Q  50 aaacaaattcatcactggaaaatgaattgaaagagatggaaaggaattagaattgaacctgatggtgcaacaatggaaaaatcgaatcaaaagtgattat 149  Q
    |||||||||||||||| |||| ||||||||||||||||||||  ||||||||| |||||||||| |||||||||||| |||||||||||||||  |||||    
T  47575 aaacaaattcatcacttgaaa-tgaattgaaagagatggaaataaattagaatggaacctgatgttgcaacaatggacaaatcgaatcaaaagaaattat 47477  T
Q  150 tcttgagctatgtatgtaattgggctagtacatgtttaagtaatattcattattcttgcggtttggttcggtt 222  Q
    ||||||||||    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||    
T  47476 tcttgagcta----tgtaattgggctagtagatgtttaagtaatattcattattcttgtggtttggtttggtt 47408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 5558 - 5518
Alignment:
Q  209 ggtttggttcggttgctgagatgcaaaccacaaaccaaacc 249  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  5558 ggtttggttcggttgctgagatgcaaaccgcaaaccgaacc 5518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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