View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16517_low_24 (Length: 259)
Name: NF16517_low_24
Description: NF16517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16517_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 49 - 240
Target Start/End: Complemental strand, 44109651 - 44109460
Alignment:
| Q |
49 |
aacagaaatagatttgcatgggaaacacaactaaaggcaacattgcgcatcaatacgcattatattatacacaatatttaaaaagataaatgatgatgat |
148 |
Q |
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| T |
44109651 |
aacagaaatagatttgcatgggaaacacaactaaaggcaacattgcgcatcaatacacattatattatacacaatatttaaaaagataaatgatgatgat |
44109552 |
T |
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| Q |
149 |
cagataaaagataatacataccttcaaagcgttcgctgatagtgcgagagacttgacacttgcaagtccactcaatagcacaactgaataag |
240 |
Q |
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| T |
44109551 |
cagataaaagataatacataccttcaaagcgtttgctgatagtgcgagagacttgacacttgcaagtccactcaatagcacaactgaataag |
44109460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 55 - 170
Target Start/End: Complemental strand, 40276557 - 40276437
Alignment:
| Q |
55 |
aatagatttgcatgggaaacacaactaaaggcaacattgcgcatcaatacgcat-----tatattatacacaatatttaaaaagataaatgatgatgatc |
149 |
Q |
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| T |
40276557 |
aatagacttgcatgggaaacacagccaaaggcaacattgtgcgtcaatacgcatcttattatattatacacaatatttaaaaagataaatgaagatgttc |
40276458 |
T |
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| Q |
150 |
agataaaagataatacatacc |
170 |
Q |
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| T |
40276457 |
agaaaaaagacaatacatacc |
40276437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 113 - 240
Target Start/End: Original strand, 40450765 - 40450893
Alignment:
| Q |
113 |
ttatacacaatatttaaaaagat-aaatgatgatgatcagataaaagataatacataccttcaaagcgttcgctgatagtgcgagagacttgacacttgc |
211 |
Q |
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| T |
40450765 |
ttatacacaatatttaaaaagattaaatgaagatgatgagagaaaaggtaatacataccctaaaagtgtcctttgatagtgtaagagacttgacacttgc |
40450864 |
T |
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| Q |
212 |
aagtccactcaatagcacaactgaataag |
240 |
Q |
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| T |
40450865 |
aagtccactcagtagcacaaccgaataag |
40450893 |
T |
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